miRNA display CGI


Results 1 - 20 of 115 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26260 5' -60.8 NC_005345.2 + 45663 1.1 0.000247
Target:  5'- cCUGCGACGACCGGGCAGUGCACCCGGa -3'
miRNA:   3'- -GACGCUGCUGGCCCGUCACGUGGGCC- -5'
26260 5' -60.8 NC_005345.2 + 40056 0.82 0.035302
Target:  5'- -cGCGACGugCGGGCGGUcGCcggcgacggcgGCCCGGa -3'
miRNA:   3'- gaCGCUGCugGCCCGUCA-CG-----------UGGGCC- -5'
26260 5' -60.8 NC_005345.2 + 34627 0.8 0.049506
Target:  5'- gUGCGGCGGuCgGGGCGGUGCGcugcuCCCGGu -3'
miRNA:   3'- gACGCUGCU-GgCCCGUCACGU-----GGGCC- -5'
26260 5' -60.8 NC_005345.2 + 17251 0.78 0.060222
Target:  5'- -cGCGucCGACCGGGCGGcagGCGCCgCGGu -3'
miRNA:   3'- gaCGCu-GCUGGCCCGUCa--CGUGG-GCC- -5'
26260 5' -60.8 NC_005345.2 + 31320 0.78 0.063675
Target:  5'- --cCGGCGGCCGGGCGGgaagggGCACgCCGGc -3'
miRNA:   3'- gacGCUGCUGGCCCGUCa-----CGUG-GGCC- -5'
26260 5' -60.8 NC_005345.2 + 6609 0.77 0.079498
Target:  5'- -aGCuGugGACCGgcGGCGGuUGCGCCCGGc -3'
miRNA:   3'- gaCG-CugCUGGC--CCGUC-ACGUGGGCC- -5'
26260 5' -60.8 NC_005345.2 + 31196 0.77 0.081723
Target:  5'- -cGCGGCGGgUGcGGCGGgugcGCACCCGGg -3'
miRNA:   3'- gaCGCUGCUgGC-CCGUCa---CGUGGGCC- -5'
26260 5' -60.8 NC_005345.2 + 7114 0.75 0.105738
Target:  5'- -cGCGACGuguggcgccgcgcgaACCGGGCGGgGCacgugGCCCGGg -3'
miRNA:   3'- gaCGCUGC---------------UGGCCCGUCaCG-----UGGGCC- -5'
26260 5' -60.8 NC_005345.2 + 9628 0.75 0.116587
Target:  5'- cCUGCucGAuCGGCCGGGUccacucGG-GCACCCGGg -3'
miRNA:   3'- -GACG--CU-GCUGGCCCG------UCaCGUGGGCC- -5'
26260 5' -60.8 NC_005345.2 + 44496 0.74 0.11978
Target:  5'- -gGCGACGGCCGaGGCAcaGCaggcgacgGCCCGGa -3'
miRNA:   3'- gaCGCUGCUGGC-CCGUcaCG--------UGGGCC- -5'
26260 5' -60.8 NC_005345.2 + 13034 0.74 0.129506
Target:  5'- aCUGCGGCGACCGgaucaccGGCAGcgGCAUcguguggaCCGGa -3'
miRNA:   3'- -GACGCUGCUGGC-------CCGUCa-CGUG--------GGCC- -5'
26260 5' -60.8 NC_005345.2 + 5208 0.73 0.144504
Target:  5'- -gGC-ACGGCCGGGCAGcucGCGgCCGGc -3'
miRNA:   3'- gaCGcUGCUGGCCCGUCa--CGUgGGCC- -5'
26260 5' -60.8 NC_005345.2 + 29870 0.73 0.155231
Target:  5'- -cGCGugGAggUGGGCgaggacggucgacaGGUGCACCCGGu -3'
miRNA:   3'- gaCGCugCUg-GCCCG--------------UCACGUGGGCC- -5'
26260 5' -60.8 NC_005345.2 + 41037 0.73 0.156053
Target:  5'- -cGaCGGCGGCCGGGUcggucuugcggaAGUGCucuugcaGCCCGGc -3'
miRNA:   3'- gaC-GCUGCUGGCCCG------------UCACG-------UGGGCC- -5'
26260 5' -60.8 NC_005345.2 + 35740 0.73 0.156466
Target:  5'- -cGCGGCGGCCGaacgaGCGGcgGCAuCCCGGg -3'
miRNA:   3'- gaCGCUGCUGGCc----CGUCa-CGU-GGGCC- -5'
26260 5' -60.8 NC_005345.2 + 36260 0.73 0.156466
Target:  5'- -cGCGGCGAUCGaGGCgAGcgGcCACCCGGc -3'
miRNA:   3'- gaCGCUGCUGGC-CCG-UCa-C-GUGGGCC- -5'
26260 5' -60.8 NC_005345.2 + 48335 0.72 0.178402
Target:  5'- gUGUGACGGCCcccGGGCgagcaGGUGUaagcggGCCCGGu -3'
miRNA:   3'- gACGCUGCUGG---CCCG-----UCACG------UGGGCC- -5'
26260 5' -60.8 NC_005345.2 + 10144 0.72 0.178402
Target:  5'- -gGCGGCGGCCGcucuGCGGaGCGCCCGc -3'
miRNA:   3'- gaCGCUGCUGGCc---CGUCaCGUGGGCc -5'
26260 5' -60.8 NC_005345.2 + 15654 0.71 0.192839
Target:  5'- -cGCaauGCGACCGGGCccgguGGUGaCACaCCGGg -3'
miRNA:   3'- gaCGc--UGCUGGCCCG-----UCAC-GUG-GGCC- -5'
26260 5' -60.8 NC_005345.2 + 43792 0.71 0.192839
Target:  5'- cCUGgaGAUcGCCGGGCAGcGCGCCCa- -3'
miRNA:   3'- -GACg-CUGcUGGCCCGUCaCGUGGGcc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.