Results 1 - 20 of 115 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26260 | 5' | -60.8 | NC_005345.2 | + | 45539 | 0.65 | 0.449606 |
Target: 5'- aCUGCGcgagcagggcgacaGCGGCCgaggucgGGGCGGgccgguUGCGgCCGGg -3' miRNA: 3'- -GACGC--------------UGCUGG-------CCCGUC------ACGUgGGCC- -5' |
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26260 | 5' | -60.8 | NC_005345.2 | + | 34157 | 0.66 | 0.407287 |
Target: 5'- -gGCGGCGGCCccgaGG-AGUG-GCCCGGg -3' miRNA: 3'- gaCGCUGCUGGc---CCgUCACgUGGGCC- -5' |
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26260 | 5' | -60.8 | NC_005345.2 | + | 18541 | 0.66 | 0.398423 |
Target: 5'- -gGCGGucUGAUCGGGCGGcUGCAgCUGa -3' miRNA: 3'- gaCGCU--GCUGGCCCGUC-ACGUgGGCc -5' |
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26260 | 5' | -60.8 | NC_005345.2 | + | 7498 | 0.66 | 0.398423 |
Target: 5'- -aGUGGCgGGCCgccauucgguGGGC-GUGCugCCGGc -3' miRNA: 3'- gaCGCUG-CUGG----------CCCGuCACGugGGCC- -5' |
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26260 | 5' | -60.8 | NC_005345.2 | + | 16120 | 0.66 | 0.398423 |
Target: 5'- -aGCaGCGGCCGGcCGGcgGCGuCCCGGc -3' miRNA: 3'- gaCGcUGCUGGCCcGUCa-CGU-GGGCC- -5' |
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26260 | 5' | -60.8 | NC_005345.2 | + | 15369 | 0.66 | 0.398423 |
Target: 5'- -gGCGGCGAC--GGCAGcGCggggguacuugGCCCGGg -3' miRNA: 3'- gaCGCUGCUGgcCCGUCaCG-----------UGGGCC- -5' |
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26260 | 5' | -60.8 | NC_005345.2 | + | 23358 | 0.66 | 0.398423 |
Target: 5'- gCUGCGcuGgGAgCGGGCcgAG-GCGCCCGa -3' miRNA: 3'- -GACGC--UgCUgGCCCG--UCaCGUGGGCc -5' |
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26260 | 5' | -60.8 | NC_005345.2 | + | 8082 | 0.66 | 0.401954 |
Target: 5'- -aGCaGGCGGCCGGGCugcaAGaGCacuuccgcaagaccgACCCGGc -3' miRNA: 3'- gaCG-CUGCUGGCCCG----UCaCG---------------UGGGCC- -5' |
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26260 | 5' | -60.8 | NC_005345.2 | + | 24777 | 0.66 | 0.407288 |
Target: 5'- gUGCGGgcgucgucCGACCucggcaaGGUGGUGCAgCCGGg -3' miRNA: 3'- gACGCU--------GCUGGc------CCGUCACGUgGGCC- -5' |
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26260 | 5' | -60.8 | NC_005345.2 | + | 14630 | 0.66 | 0.407287 |
Target: 5'- -cGCGAgGACCGGGa---GCACCucgCGGu -3' miRNA: 3'- gaCGCUgCUGGCCCgucaCGUGG---GCC- -5' |
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26260 | 5' | -60.8 | NC_005345.2 | + | 20320 | 0.66 | 0.416275 |
Target: 5'- -cGCGuccACGGCgaUGGGCAG-GCGCgCGGu -3' miRNA: 3'- gaCGC---UGCUG--GCCCGUCaCGUGgGCC- -5' |
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26260 | 5' | -60.8 | NC_005345.2 | + | 36784 | 0.66 | 0.416275 |
Target: 5'- gCUGCGagGCG-UCGGGCcccGUGCAgCCGa -3' miRNA: 3'- -GACGC--UGCuGGCCCGu--CACGUgGGCc -5' |
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26260 | 5' | -60.8 | NC_005345.2 | + | 4356 | 0.66 | 0.443948 |
Target: 5'- cCUGCcuCGGgCGGGCGG-GCcGCUCGGu -3' miRNA: 3'- -GACGcuGCUgGCCCGUCaCG-UGGGCC- -5' |
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26260 | 5' | -60.8 | NC_005345.2 | + | 38382 | 0.66 | 0.443948 |
Target: 5'- gCUGUcucGACGGCC-GGCAG-GgGCUCGGc -3' miRNA: 3'- -GACG---CUGCUGGcCCGUCaCgUGGGCC- -5' |
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26260 | 5' | -60.8 | NC_005345.2 | + | 31861 | 0.66 | 0.443948 |
Target: 5'- cCUGCGGCGAacgugggcaCGGGUucgGGUGCGgugagUUCGGg -3' miRNA: 3'- -GACGCUGCUg--------GCCCG---UCACGU-----GGGCC- -5' |
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26260 | 5' | -60.8 | NC_005345.2 | + | 30501 | 0.66 | 0.443948 |
Target: 5'- gCUGCcggacaGCGACCcgcGGGCgagGGUGCugCCGc -3' miRNA: 3'- -GACGc-----UGCUGG---CCCG---UCACGugGGCc -5' |
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26260 | 5' | -60.8 | NC_005345.2 | + | 10226 | 0.66 | 0.434608 |
Target: 5'- aUGCGggugaaguuccACGcCCcGGCGGU-CACCCGGg -3' miRNA: 3'- gACGC-----------UGCuGGcCCGUCAcGUGGGCC- -5' |
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26260 | 5' | -60.8 | NC_005345.2 | + | 47102 | 0.66 | 0.425383 |
Target: 5'- -cGCGGCccGCCGGGCc--GCGCCgGGc -3' miRNA: 3'- gaCGCUGc-UGGCCCGucaCGUGGgCC- -5' |
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26260 | 5' | -60.8 | NC_005345.2 | + | 25768 | 0.66 | 0.425383 |
Target: 5'- aUGCGGaagUCGGGCAGcucggGCGCCuCGGc -3' miRNA: 3'- gACGCUgcuGGCCCGUCa----CGUGG-GCC- -5' |
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26260 | 5' | -60.8 | NC_005345.2 | + | 37032 | 0.66 | 0.425383 |
Target: 5'- -aGCGGC-ACCGGGCgAGccgGgAUCCGGc -3' miRNA: 3'- gaCGCUGcUGGCCCG-UCa--CgUGGGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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