miRNA display CGI


Results 61 - 80 of 131 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26261 3' -57.3 NC_005345.2 + 22315 0.68 0.478732
Target:  5'- cGCUCGGCGcgccgggugccggcAGCAgugaugCGGCgaGCAGCGc -3'
miRNA:   3'- -CGAGCCGC--------------UCGUa-----GCUGagCGUCGCc -5'
26261 3' -57.3 NC_005345.2 + 16349 0.68 0.471756
Target:  5'- -gUCGGCG-GCAUCGcgGCcggCGCcGCGGu -3'
miRNA:   3'- cgAGCCGCuCGUAGC--UGa--GCGuCGCC- -5'
26261 3' -57.3 NC_005345.2 + 38043 0.68 0.471756
Target:  5'- aCUCuGUG-GCAUCGGaUCGCGGUGGc -3'
miRNA:   3'- cGAGcCGCuCGUAGCUgAGCGUCGCC- -5'
26261 3' -57.3 NC_005345.2 + 14791 0.68 0.471756
Target:  5'- cGCccCGGUGcGCuUCGACgucgaGCGGCGGg -3'
miRNA:   3'- -CGa-GCCGCuCGuAGCUGag---CGUCGCC- -5'
26261 3' -57.3 NC_005345.2 + 34516 0.68 0.471756
Target:  5'- cGCggucgaGGCGGGCcgCGGcCUCGCGGgCGu -3'
miRNA:   3'- -CGag----CCGCUCGuaGCU-GAGCGUC-GCc -5'
26261 3' -57.3 NC_005345.2 + 2900 0.68 0.471756
Target:  5'- cCUCGaCGAGCGgaUCGGCggaccggGCAGCGGc -3'
miRNA:   3'- cGAGCcGCUCGU--AGCUGag-----CGUCGCC- -5'
26261 3' -57.3 NC_005345.2 + 35869 0.68 0.46188
Target:  5'- cGCacCGGCGAGCugcCGG--UGCAGCGGu -3'
miRNA:   3'- -CGa-GCCGCUCGua-GCUgaGCGUCGCC- -5'
26261 3' -57.3 NC_005345.2 + 13267 0.68 0.46188
Target:  5'- --cCGGCGAGCA---GCUCGuCGGCGa -3'
miRNA:   3'- cgaGCCGCUCGUagcUGAGC-GUCGCc -5'
26261 3' -57.3 NC_005345.2 + 45532 0.68 0.46188
Target:  5'- cGCUUGcacugcGCGAGCAgggCGACagcggccgaggUCGgGGCGGg -3'
miRNA:   3'- -CGAGC------CGCUCGUa--GCUG-----------AGCgUCGCC- -5'
26261 3' -57.3 NC_005345.2 + 45161 0.68 0.452114
Target:  5'- gGCUCGuccgacCGGGCcUCGACgUCGCAGCc- -3'
miRNA:   3'- -CGAGCc-----GCUCGuAGCUG-AGCGUCGcc -5'
26261 3' -57.3 NC_005345.2 + 5596 0.68 0.452114
Target:  5'- cGgUCGGCGAGCuuGUCGGCgacgaGCucGGCGa -3'
miRNA:   3'- -CgAGCCGCUCG--UAGCUGag---CG--UCGCc -5'
26261 3' -57.3 NC_005345.2 + 25699 0.69 0.439588
Target:  5'- cGCUCGGCGugaccgguccggacGGCGaaccCGACacccgggcgUCGCGGUGGu -3'
miRNA:   3'- -CGAGCCGC--------------UCGUa---GCUG---------AGCGUCGCC- -5'
26261 3' -57.3 NC_005345.2 + 43464 0.69 0.432927
Target:  5'- --gCGGCGAGUucgCGGCgcagCGCGGuCGGc -3'
miRNA:   3'- cgaGCCGCUCGua-GCUGa---GCGUC-GCC- -5'
26261 3' -57.3 NC_005345.2 + 12359 0.69 0.432927
Target:  5'- -aUCGGCugcacgGGGCccgaCGcCUCGCAGCGGa -3'
miRNA:   3'- cgAGCCG------CUCGua--GCuGAGCGUCGCC- -5'
26261 3' -57.3 NC_005345.2 + 11662 0.69 0.423513
Target:  5'- cGCcCGGCGGGaaCGUCGuaccGCUCGCccgcgcugcaGGCGGa -3'
miRNA:   3'- -CGaGCCGCUC--GUAGC----UGAGCG----------UCGCC- -5'
26261 3' -57.3 NC_005345.2 + 24065 0.69 0.423513
Target:  5'- cGCguaCGGCGAGCcgAUCGgccggccguggcACUCGguGCGu -3'
miRNA:   3'- -CGa--GCCGCUCG--UAGC------------UGAGCguCGCc -5'
26261 3' -57.3 NC_005345.2 + 4259 0.69 0.423513
Target:  5'- uGCUCGGCGAaCAcCGg--CGguGCGGg -3'
miRNA:   3'- -CGAGCCGCUcGUaGCugaGCguCGCC- -5'
26261 3' -57.3 NC_005345.2 + 42527 0.69 0.420713
Target:  5'- gGCUCGGCaccgacaucacGAGCAucguccgacacgagUCGACgaGCAGCGa -3'
miRNA:   3'- -CGAGCCG-----------CUCGU--------------AGCUGagCGUCGCc -5'
26261 3' -57.3 NC_005345.2 + 19954 0.69 0.414223
Target:  5'- aGCUUcccaGGCGcAGCcgGUCGuACUCGUucAGCGGg -3'
miRNA:   3'- -CGAG----CCGC-UCG--UAGC-UGAGCG--UCGCC- -5'
26261 3' -57.3 NC_005345.2 + 25139 0.69 0.414223
Target:  5'- cCUCGGCGAGCG-CGAUcgCGCcgacgaacGGCGa -3'
miRNA:   3'- cGAGCCGCUCGUaGCUGa-GCG--------UCGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.