Results 41 - 60 of 131 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26261 | 3' | -57.3 | NC_005345.2 | + | 6986 | 0.67 | 0.512271 |
Target: 5'- aGCUgcUGGcCGGGCGcCGACagGCAGCGu -3' miRNA: 3'- -CGA--GCC-GCUCGUaGCUGagCGUCGCc -5' |
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26261 | 3' | -57.3 | NC_005345.2 | + | 12249 | 0.67 | 0.512271 |
Target: 5'- -gUCGaGCGAGCAggccCGGCUCGUu-CGGa -3' miRNA: 3'- cgAGC-CGCUCGUa---GCUGAGCGucGCC- -5' |
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26261 | 3' | -57.3 | NC_005345.2 | + | 2155 | 0.67 | 0.512271 |
Target: 5'- cGCUUGcCGAGCuuccacgcGUUGAC-CGUGGCGGg -3' miRNA: 3'- -CGAGCcGCUCG--------UAGCUGaGCGUCGCC- -5' |
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26261 | 3' | -57.3 | NC_005345.2 | + | 18027 | 0.67 | 0.512271 |
Target: 5'- cGC-CgGGCGAGCGcaggaacgCGGCcacgUUGCGGCGGg -3' miRNA: 3'- -CGaG-CCGCUCGUa-------GCUG----AGCGUCGCC- -5' |
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26261 | 3' | -57.3 | NC_005345.2 | + | 37866 | 0.68 | 0.502 |
Target: 5'- gGC-CGGCGAgGCucaGGCccggacggUCGCGGCGGu -3' miRNA: 3'- -CGaGCCGCU-CGuagCUG--------AGCGUCGCC- -5' |
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26261 | 3' | -57.3 | NC_005345.2 | + | 40207 | 0.68 | 0.502 |
Target: 5'- aGCUCGGC-AGCuacGUCGAgaCGguGCcGGu -3' miRNA: 3'- -CGAGCCGcUCG---UAGCUgaGCguCG-CC- -5' |
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26261 | 3' | -57.3 | NC_005345.2 | + | 45080 | 0.68 | 0.500978 |
Target: 5'- gGCUCGGCGcaccgaGGCAuaccgugUCGgcGCUCGuCGGCGc -3' miRNA: 3'- -CGAGCCGC------UCGU-------AGC--UGAGC-GUCGCc -5' |
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26261 | 3' | -57.3 | NC_005345.2 | + | 19414 | 0.68 | 0.500978 |
Target: 5'- aGCUCGGuCGGcugcgccGCGUCGG-UCGCAcCGGg -3' miRNA: 3'- -CGAGCC-GCU-------CGUAGCUgAGCGUcGCC- -5' |
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26261 | 3' | -57.3 | NC_005345.2 | + | 27303 | 0.68 | 0.498936 |
Target: 5'- aGCUCGcccgcacgcaugccGCGcAGCAgUCGAUgucgCGUGGCGGg -3' miRNA: 3'- -CGAGC--------------CGC-UCGU-AGCUGa---GCGUCGCC- -5' |
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26261 | 3' | -57.3 | NC_005345.2 | + | 48199 | 0.68 | 0.497917 |
Target: 5'- uGCUCGGgGAGCAccuagugcgcgaccUCGACgacgugacgccggUCGaucuGCGGg -3' miRNA: 3'- -CGAGCCgCUCGU--------------AGCUG-------------AGCgu--CGCC- -5' |
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26261 | 3' | -57.3 | NC_005345.2 | + | 10851 | 0.68 | 0.491821 |
Target: 5'- aGCUgCGGUGGGCG--GACUgcCGCAcGCGGc -3' miRNA: 3'- -CGA-GCCGCUCGUagCUGA--GCGU-CGCC- -5' |
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26261 | 3' | -57.3 | NC_005345.2 | + | 14907 | 0.68 | 0.491821 |
Target: 5'- aGCgggCGaaGCGGGCcgCGGCgcggcggcUGCAGCGGg -3' miRNA: 3'- -CGa--GC--CGCUCGuaGCUGa-------GCGUCGCC- -5' |
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26261 | 3' | -57.3 | NC_005345.2 | + | 36777 | 0.68 | 0.491821 |
Target: 5'- gGgUCGGCGucGGCgAUCGGCacagcCGCAGCGc -3' miRNA: 3'- -CgAGCCGC--UCG-UAGCUGa----GCGUCGCc -5' |
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26261 | 3' | -57.3 | NC_005345.2 | + | 7326 | 0.68 | 0.491821 |
Target: 5'- -gUCGGCGGaCGcCGAgUCGCAcGCGGu -3' miRNA: 3'- cgAGCCGCUcGUaGCUgAGCGU-CGCC- -5' |
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26261 | 3' | -57.3 | NC_005345.2 | + | 2355 | 0.68 | 0.485759 |
Target: 5'- uGCUUGGCGGcGCAgcccggucgCGAcCUCGCGggcccaaggguguucGCGGg -3' miRNA: 3'- -CGAGCCGCU-CGUa--------GCU-GAGCGU---------------CGCC- -5' |
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26261 | 3' | -57.3 | NC_005345.2 | + | 8612 | 0.68 | 0.482741 |
Target: 5'- aGCUCGGCGAucacgaacguuccgGCGgcgucgcaguacaccUCGGCgccgaucgUCGCGGCGa -3' miRNA: 3'- -CGAGCCGCU--------------CGU---------------AGCUG--------AGCGUCGCc -5' |
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26261 | 3' | -57.3 | NC_005345.2 | + | 4360 | 0.68 | 0.481738 |
Target: 5'- cCUCgGGCGGGCGggCcGCUCGguGgGGg -3' miRNA: 3'- cGAG-CCGCUCGUa-GcUGAGCguCgCC- -5' |
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26261 | 3' | -57.3 | NC_005345.2 | + | 41087 | 0.68 | 0.481738 |
Target: 5'- uGCUCGGCG-GCGagcUUGAUcUGCAGCu- -3' miRNA: 3'- -CGAGCCGCuCGU---AGCUGaGCGUCGcc -5' |
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26261 | 3' | -57.3 | NC_005345.2 | + | 36665 | 0.68 | 0.481738 |
Target: 5'- aCUCGGCGAGCuccgCGAgaUCGUcGCGc -3' miRNA: 3'- cGAGCCGCUCGua--GCUg-AGCGuCGCc -5' |
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26261 | 3' | -57.3 | NC_005345.2 | + | 32516 | 0.68 | 0.481738 |
Target: 5'- uGC-CGGCGGGCGgccCGAUcUGC-GCGGg -3' miRNA: 3'- -CGaGCCGCUCGUa--GCUGaGCGuCGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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