miRNA display CGI


Results 21 - 40 of 131 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26261 3' -57.3 NC_005345.2 + 37087 0.67 0.56372
Target:  5'- -gUCGGCGAGCGaugaacUCGgcgccggucuccaGCUCGgCAGgGGc -3'
miRNA:   3'- cgAGCCGCUCGU------AGC-------------UGAGC-GUCgCC- -5'
26261 3' -57.3 NC_005345.2 + 31601 0.67 0.554149
Target:  5'- uGCUCGGCGcGGCccgCGGaUCGCAugGCGa -3'
miRNA:   3'- -CGAGCCGC-UCGua-GCUgAGCGU--CGCc -5'
26261 3' -57.3 NC_005345.2 + 28398 0.67 0.554149
Target:  5'- cGCcgCGGCG-GCAgCGGCagGCAggGCGGa -3'
miRNA:   3'- -CGa-GCCGCuCGUaGCUGagCGU--CGCC- -5'
26261 3' -57.3 NC_005345.2 + 27569 0.67 0.553089
Target:  5'- cGUUCGGgGGGcCGUCGGgccguCUCGCGccaacguGCGGc -3'
miRNA:   3'- -CGAGCCgCUC-GUAGCU-----GAGCGU-------CGCC- -5'
26261 3' -57.3 NC_005345.2 + 10072 0.67 0.553089
Target:  5'- cGUcgCGGCGAGCGUCcACUcgaucgccgccugCGUAGCGc -3'
miRNA:   3'- -CGa-GCCGCUCGUAGcUGA-------------GCGUCGCc -5'
26261 3' -57.3 NC_005345.2 + 3024 0.67 0.543573
Target:  5'- aGCcgggCGGCGgcAGCAU--GCUCGCuuGCGGg -3'
miRNA:   3'- -CGa---GCCGC--UCGUAgcUGAGCGu-CGCC- -5'
26261 3' -57.3 NC_005345.2 + 9176 0.67 0.543573
Target:  5'- aCUCGGCGAGCGUggCGAggaaUCGCGcuguuGcCGGa -3'
miRNA:   3'- cGAGCCGCUCGUA--GCUg---AGCGU-----C-GCC- -5'
26261 3' -57.3 NC_005345.2 + 9878 0.67 0.543573
Target:  5'- uGCUCGaCGAGCAgcagCGggccgaACUCGgCGGCGa -3'
miRNA:   3'- -CGAGCcGCUCGUa---GC------UGAGC-GUCGCc -5'
26261 3' -57.3 NC_005345.2 + 24829 0.67 0.543573
Target:  5'- uGCUCGG-GuuCGaCGGCUCGCgcaAGCGGu -3'
miRNA:   3'- -CGAGCCgCucGUaGCUGAGCG---UCGCC- -5'
26261 3' -57.3 NC_005345.2 + 5027 0.67 0.533063
Target:  5'- aCUCGaCGAaCGUCGACgagCGCAGCa- -3'
miRNA:   3'- cGAGCcGCUcGUAGCUGa--GCGUCGcc -5'
26261 3' -57.3 NC_005345.2 + 1617 0.67 0.533063
Target:  5'- cGUUCGGUGAuGagGUCGG-UCGCGGCGa -3'
miRNA:   3'- -CGAGCCGCU-Cg-UAGCUgAGCGUCGCc -5'
26261 3' -57.3 NC_005345.2 + 22665 0.67 0.533063
Target:  5'- uGCggaCGGuCGGGCAgUCG-CUCGUcguGGCGGu -3'
miRNA:   3'- -CGa--GCC-GCUCGU-AGCuGAGCG---UCGCC- -5'
26261 3' -57.3 NC_005345.2 + 46819 0.67 0.533063
Target:  5'- cGCUCGGacgcCGAGuCGUUGACgcacuUCGCcgAGUGGa -3'
miRNA:   3'- -CGAGCC----GCUC-GUAGCUG-----AGCG--UCGCC- -5'
26261 3' -57.3 NC_005345.2 + 25662 0.67 0.532016
Target:  5'- -gUCGGaCGAGCcgaagugAUCGGCcUGCGGCGa -3'
miRNA:   3'- cgAGCC-GCUCG-------UAGCUGaGCGUCGCc -5'
26261 3' -57.3 NC_005345.2 + 36162 0.67 0.522627
Target:  5'- -aUCGGCGGGUc-CGGCgUGCAGCGu -3'
miRNA:   3'- cgAGCCGCUCGuaGCUGaGCGUCGCc -5'
26261 3' -57.3 NC_005345.2 + 39337 0.67 0.522627
Target:  5'- gGCaUCGGCG-GCAcCGGC-CGCgacacAGCGGc -3'
miRNA:   3'- -CG-AGCCGCuCGUaGCUGaGCG-----UCGCC- -5'
26261 3' -57.3 NC_005345.2 + 15963 0.67 0.522627
Target:  5'- cGUUCGGCGcuGCcaGUUGGCgaugugCGCGGCGu -3'
miRNA:   3'- -CGAGCCGCu-CG--UAGCUGa-----GCGUCGCc -5'
26261 3' -57.3 NC_005345.2 + 37725 0.67 0.515369
Target:  5'- cGCUgCGGCGcggcgccggcuggucGGCGUCGucgaggucgagcuGCUCGCccgcaGGCGGc -3'
miRNA:   3'- -CGA-GCCGC---------------UCGUAGC-------------UGAGCG-----UCGCC- -5'
26261 3' -57.3 NC_005345.2 + 24346 0.67 0.512271
Target:  5'- --aCGGCGGGaucCGGCUCGCGaagaccauGCGGu -3'
miRNA:   3'- cgaGCCGCUCguaGCUGAGCGU--------CGCC- -5'
26261 3' -57.3 NC_005345.2 + 2155 0.67 0.512271
Target:  5'- cGCUUGcCGAGCuuccacgcGUUGAC-CGUGGCGGg -3'
miRNA:   3'- -CGAGCcGCUCG--------UAGCUGaGCGUCGCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.