miRNA display CGI


Results 21 - 40 of 131 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26261 3' -57.3 NC_005345.2 + 8734 0.69 0.405059
Target:  5'- cGCgucggUGGCGAGCG-CGACgacUGCAGCa- -3'
miRNA:   3'- -CGa----GCCGCUCGUaGCUGa--GCGUCGcc -5'
26261 3' -57.3 NC_005345.2 + 9176 0.67 0.543573
Target:  5'- aCUCGGCGAGCGUggCGAggaaUCGCGcuguuGcCGGa -3'
miRNA:   3'- cGAGCCGCUCGUA--GCUg---AGCGU-----C-GCC- -5'
26261 3' -57.3 NC_005345.2 + 9878 0.67 0.543573
Target:  5'- uGCUCGaCGAGCAgcagCGggccgaACUCGgCGGCGa -3'
miRNA:   3'- -CGAGCcGCUCGUa---GC------UGAGC-GUCGCc -5'
26261 3' -57.3 NC_005345.2 + 10072 0.67 0.553089
Target:  5'- cGUcgCGGCGAGCGUCcACUcgaucgccgccugCGUAGCGc -3'
miRNA:   3'- -CGa-GCCGCUCGUAGcUGA-------------GCGUCGCc -5'
26261 3' -57.3 NC_005345.2 + 10851 0.68 0.491821
Target:  5'- aGCUgCGGUGGGCG--GACUgcCGCAcGCGGc -3'
miRNA:   3'- -CGA-GCCGCUCGUagCUGA--GCGU-CGCC- -5'
26261 3' -57.3 NC_005345.2 + 10854 0.66 0.596982
Target:  5'- cGC-CGGCGAGguaguaGUCGACggGCcacugcaaGGCGGg -3'
miRNA:   3'- -CGaGCCGCUCg-----UAGCUGagCG--------UCGCC- -5'
26261 3' -57.3 NC_005345.2 + 11570 0.66 0.575475
Target:  5'- cGCcCGGC-AGC-UCGACgacgggcgccUCGCGGUGGc -3'
miRNA:   3'- -CGaGCCGcUCGuAGCUG----------AGCGUCGCC- -5'
26261 3' -57.3 NC_005345.2 + 11662 0.69 0.423513
Target:  5'- cGCcCGGCGGGaaCGUCGuaccGCUCGCccgcgcugcaGGCGGa -3'
miRNA:   3'- -CGaGCCGCUC--GUAGC----UGAGCG----------UCGCC- -5'
26261 3' -57.3 NC_005345.2 + 12198 0.72 0.290941
Target:  5'- aCUCGacgaCGAGCGagGACUCGCcGCGGu -3'
miRNA:   3'- cGAGCc---GCUCGUagCUGAGCGuCGCC- -5'
26261 3' -57.3 NC_005345.2 + 12249 0.67 0.512271
Target:  5'- -gUCGaGCGAGCAggccCGGCUCGUu-CGGa -3'
miRNA:   3'- cgAGC-CGCUCGUa---GCUGAGCGucGCC- -5'
26261 3' -57.3 NC_005345.2 + 12359 0.69 0.432927
Target:  5'- -aUCGGCugcacgGGGCccgaCGcCUCGCAGCGGa -3'
miRNA:   3'- cgAGCCG------CUCGua--GCuGAGCGUCGCC- -5'
26261 3' -57.3 NC_005345.2 + 12616 0.75 0.178369
Target:  5'- cGCUCGGcCGGGCAcggcUCGGgcaccgggcCUCGgAGCGGg -3'
miRNA:   3'- -CGAGCC-GCUCGU----AGCU---------GAGCgUCGCC- -5'
26261 3' -57.3 NC_005345.2 + 13267 0.68 0.46188
Target:  5'- --cCGGCGAGCA---GCUCGuCGGCGa -3'
miRNA:   3'- cgaGCCGCUCGUagcUGAGC-GUCGCc -5'
26261 3' -57.3 NC_005345.2 + 13506 0.66 0.618604
Target:  5'- gGCgCGGCGAGCAcccgUCGA-UCGUGuucugggaccGCGGg -3'
miRNA:   3'- -CGaGCCGCUCGU----AGCUgAGCGU----------CGCC- -5'
26261 3' -57.3 NC_005345.2 + 14791 0.68 0.471756
Target:  5'- cGCccCGGUGcGCuUCGACgucgaGCGGCGGg -3'
miRNA:   3'- -CGa-GCCGCuCGuAGCUGag---CGUCGCC- -5'
26261 3' -57.3 NC_005345.2 + 14907 0.68 0.491821
Target:  5'- aGCgggCGaaGCGGGCcgCGGCgcggcggcUGCAGCGGg -3'
miRNA:   3'- -CGa--GC--CGCUCGuaGCUGa-------GCGUCGCC- -5'
26261 3' -57.3 NC_005345.2 + 15325 0.7 0.378348
Target:  5'- aGgUCGGU--GCGUCGGCcggggCGUAGCGGg -3'
miRNA:   3'- -CgAGCCGcuCGUAGCUGa----GCGUCGCC- -5'
26261 3' -57.3 NC_005345.2 + 15963 0.67 0.522627
Target:  5'- cGUUCGGCGcuGCcaGUUGGCgaugugCGCGGCGu -3'
miRNA:   3'- -CGAGCCGCu-CG--UAGCUGa-----GCGUCGCc -5'
26261 3' -57.3 NC_005345.2 + 16349 0.68 0.471756
Target:  5'- -gUCGGCG-GCAUCGcgGCcggCGCcGCGGu -3'
miRNA:   3'- cgAGCCGCuCGUAGC--UGa--GCGuCGCC- -5'
26261 3' -57.3 NC_005345.2 + 18027 0.67 0.512271
Target:  5'- cGC-CgGGCGAGCGcaggaacgCGGCcacgUUGCGGCGGg -3'
miRNA:   3'- -CGaG-CCGCUCGUa-------GCUG----AGCGUCGCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.