miRNA display CGI


Results 1 - 20 of 131 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26261 3' -57.3 NC_005345.2 + 1617 0.67 0.533063
Target:  5'- cGUUCGGUGAuGagGUCGG-UCGCGGCGa -3'
miRNA:   3'- -CGAGCCGCU-Cg-UAGCUgAGCGUCGCc -5'
26261 3' -57.3 NC_005345.2 + 2155 0.67 0.512271
Target:  5'- cGCUUGcCGAGCuuccacgcGUUGAC-CGUGGCGGg -3'
miRNA:   3'- -CGAGCcGCUCG--------UAGCUGaGCGUCGCC- -5'
26261 3' -57.3 NC_005345.2 + 2355 0.68 0.485759
Target:  5'- uGCUUGGCGGcGCAgcccggucgCGAcCUCGCGggcccaaggguguucGCGGg -3'
miRNA:   3'- -CGAGCCGCU-CGUa--------GCU-GAGCGU---------------CGCC- -5'
26261 3' -57.3 NC_005345.2 + 2900 0.68 0.471756
Target:  5'- cCUCGaCGAGCGgaUCGGCggaccggGCAGCGGc -3'
miRNA:   3'- cGAGCcGCUCGU--AGCUGag-----CGUCGCC- -5'
26261 3' -57.3 NC_005345.2 + 3024 0.67 0.543573
Target:  5'- aGCcgggCGGCGgcAGCAU--GCUCGCuuGCGGg -3'
miRNA:   3'- -CGa---GCCGC--UCGUAgcUGAGCGu-CGCC- -5'
26261 3' -57.3 NC_005345.2 + 3430 0.72 0.290224
Target:  5'- cGCggCGGCGGGCggCGaugcgggccccgaGCUCGC-GCGGg -3'
miRNA:   3'- -CGa-GCCGCUCGuaGC-------------UGAGCGuCGCC- -5'
26261 3' -57.3 NC_005345.2 + 4151 0.69 0.396024
Target:  5'- cGCUCGucgaGCGGGUGUCGACgcggcaggCGCucacggGGCGGc -3'
miRNA:   3'- -CGAGC----CGCUCGUAGCUGa-------GCG------UCGCC- -5'
26261 3' -57.3 NC_005345.2 + 4259 0.69 0.423513
Target:  5'- uGCUCGGCGAaCAcCGg--CGguGCGGg -3'
miRNA:   3'- -CGAGCCGCUcGUaGCugaGCguCGCC- -5'
26261 3' -57.3 NC_005345.2 + 4360 0.68 0.481738
Target:  5'- cCUCgGGCGGGCGggCcGCUCGguGgGGg -3'
miRNA:   3'- cGAG-CCGCUCGUa-GcUGAGCguCgCC- -5'
26261 3' -57.3 NC_005345.2 + 5027 0.67 0.533063
Target:  5'- aCUCGaCGAaCGUCGACgagCGCAGCa- -3'
miRNA:   3'- cGAGCcGCUcGUAGCUGa--GCGUCGcc -5'
26261 3' -57.3 NC_005345.2 + 5208 0.66 0.618604
Target:  5'- gGCaCGGcCGGGCA---GCUCGCGGcCGGc -3'
miRNA:   3'- -CGaGCC-GCUCGUagcUGAGCGUC-GCC- -5'
26261 3' -57.3 NC_005345.2 + 5438 0.66 0.58621
Target:  5'- cUUCGGCGGcGCccggGUCGGC-CGUAGgGGc -3'
miRNA:   3'- cGAGCCGCU-CG----UAGCUGaGCGUCgCC- -5'
26261 3' -57.3 NC_005345.2 + 5596 0.68 0.452114
Target:  5'- cGgUCGGCGAGCuuGUCGGCgacgaGCucGGCGa -3'
miRNA:   3'- -CgAGCCGCUCG--UAGCUGag---CG--UCGCc -5'
26261 3' -57.3 NC_005345.2 + 6830 0.7 0.360368
Target:  5'- --aUGGCGGGCGggaUCGACaugguccUCGCGGCGa -3'
miRNA:   3'- cgaGCCGCUCGU---AGCUG-------AGCGUCGCc -5'
26261 3' -57.3 NC_005345.2 + 6986 0.67 0.512271
Target:  5'- aGCUgcUGGcCGGGCGcCGACagGCAGCGu -3'
miRNA:   3'- -CGA--GCC-GCUCGUaGCUGagCGUCGCc -5'
26261 3' -57.3 NC_005345.2 + 7326 0.68 0.491821
Target:  5'- -gUCGGCGGaCGcCGAgUCGCAcGCGGu -3'
miRNA:   3'- cgAGCCGCUcGUaGCUgAGCGU-CGCC- -5'
26261 3' -57.3 NC_005345.2 + 7512 0.66 0.58621
Target:  5'- aUUCGGUGGGCGU--GCUgccgGCGGCGGu -3'
miRNA:   3'- cGAGCCGCUCGUAgcUGAg---CGUCGCC- -5'
26261 3' -57.3 NC_005345.2 + 8025 0.7 0.352847
Target:  5'- aGCUCGaCGGGC-UCGACcucgCGCAGCu- -3'
miRNA:   3'- -CGAGCcGCUCGuAGCUGa---GCGUCGcc -5'
26261 3' -57.3 NC_005345.2 + 8098 0.82 0.063932
Target:  5'- uGUUCGGCGAGCAgugCGGC-CGCAGCu- -3'
miRNA:   3'- -CGAGCCGCUCGUa--GCUGaGCGUCGcc -5'
26261 3' -57.3 NC_005345.2 + 8612 0.68 0.482741
Target:  5'- aGCUCGGCGAucacgaacguuccgGCGgcgucgcaguacaccUCGGCgccgaucgUCGCGGCGa -3'
miRNA:   3'- -CGAGCCGCU--------------CGU---------------AGCUG--------AGCGUCGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.