miRNA display CGI


Results 1 - 20 of 131 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26261 3' -57.3 NC_005345.2 + 48563 0.71 0.313109
Target:  5'- gGCgUCGcggauGCGGGCGcCGaugaGCUCGCGGCGGg -3'
miRNA:   3'- -CG-AGC-----CGCUCGUaGC----UGAGCGUCGCC- -5'
26261 3' -57.3 NC_005345.2 + 48199 0.68 0.497917
Target:  5'- uGCUCGGgGAGCAccuagugcgcgaccUCGACgacgugacgccggUCGaucuGCGGg -3'
miRNA:   3'- -CGAGCCgCUCGU--------------AGCUG-------------AGCgu--CGCC- -5'
26261 3' -57.3 NC_005345.2 + 46819 0.67 0.533063
Target:  5'- cGCUCGGacgcCGAGuCGUUGACgcacuUCGCcgAGUGGa -3'
miRNA:   3'- -CGAGCC----GCUC-GUAGCUG-----AGCG--UCGCC- -5'
26261 3' -57.3 NC_005345.2 + 45712 0.66 0.596982
Target:  5'- gGCg-GGCGGGgGUCuGCgugCGCAGCGu -3'
miRNA:   3'- -CGagCCGCUCgUAGcUGa--GCGUCGCc -5'
26261 3' -57.3 NC_005345.2 + 45532 0.68 0.46188
Target:  5'- cGCUUGcacugcGCGAGCAgggCGACagcggccgaggUCGgGGCGGg -3'
miRNA:   3'- -CGAGC------CGCUCGUa--GCUG-----------AGCgUCGCC- -5'
26261 3' -57.3 NC_005345.2 + 45264 0.69 0.396024
Target:  5'- --aCuGCGAGCGUCGGCggagaGCAGCGc -3'
miRNA:   3'- cgaGcCGCUCGUAGCUGag---CGUCGCc -5'
26261 3' -57.3 NC_005345.2 + 45161 0.68 0.452114
Target:  5'- gGCUCGuccgacCGGGCcUCGACgUCGCAGCc- -3'
miRNA:   3'- -CGAGCc-----GCUCGuAGCUG-AGCGUCGcc -5'
26261 3' -57.3 NC_005345.2 + 45080 0.68 0.500978
Target:  5'- gGCUCGGCGcaccgaGGCAuaccgugUCGgcGCUCGuCGGCGc -3'
miRNA:   3'- -CGAGCCGC------UCGU-------AGC--UGAGC-GUCGCc -5'
26261 3' -57.3 NC_005345.2 + 44918 0.7 0.378348
Target:  5'- cGCagCGGCGAcCAUCGGCUCggcguaccGCAGCa- -3'
miRNA:   3'- -CGa-GCCGCUcGUAGCUGAG--------CGUCGcc -5'
26261 3' -57.3 NC_005345.2 + 44657 0.74 0.208987
Target:  5'- uGCUgCGGUGGGCA-CGGCUCGUcgAGcCGGa -3'
miRNA:   3'- -CGA-GCCGCUCGUaGCUGAGCG--UC-GCC- -5'
26261 3' -57.3 NC_005345.2 + 44256 1.11 0.000429
Target:  5'- aGCUCGGCGAGCAUCGACUCGCAGCGGc -3'
miRNA:   3'- -CGAGCCGCUCGUAGCUGAGCGUCGCC- -5'
26261 3' -57.3 NC_005345.2 + 44038 0.72 0.263322
Target:  5'- cGCcguaGGaGGGCAUCGggaugccgcGCUCGCGGCGGa -3'
miRNA:   3'- -CGag--CCgCUCGUAGC---------UGAGCGUCGCC- -5'
26261 3' -57.3 NC_005345.2 + 43850 0.71 0.336534
Target:  5'- uGCcCGGUcgacgGGGCGUCGGCcgggacucCGCGGCGGa -3'
miRNA:   3'- -CGaGCCG-----CUCGUAGCUGa-------GCGUCGCC- -5'
26261 3' -57.3 NC_005345.2 + 43464 0.69 0.432927
Target:  5'- --gCGGCGAGUucgCGGCgcagCGCGGuCGGc -3'
miRNA:   3'- cgaGCCGCUCGua-GCUGa---GCGUC-GCC- -5'
26261 3' -57.3 NC_005345.2 + 43297 0.73 0.225352
Target:  5'- cCUCGGCGAG-GUCGACgCGCcacagccggaaccAGCGGg -3'
miRNA:   3'- cGAGCCGCUCgUAGCUGaGCG-------------UCGCC- -5'
26261 3' -57.3 NC_005345.2 + 42527 0.69 0.420713
Target:  5'- gGCUCGGCaccgacaucacGAGCAucguccgacacgagUCGACgaGCAGCGa -3'
miRNA:   3'- -CGAGCCG-----------CUCGU--------------AGCUGagCGUCGCc -5'
26261 3' -57.3 NC_005345.2 + 42136 0.7 0.38712
Target:  5'- --cCGGCGAcccgGCGUCGA-UCGCAGCa- -3'
miRNA:   3'- cgaGCCGCU----CGUAGCUgAGCGUCGcc -5'
26261 3' -57.3 NC_005345.2 + 42071 0.8 0.080221
Target:  5'- uGCUCGGCGAcaGCGUCGAgCUaCGCGGCa- -3'
miRNA:   3'- -CGAGCCGCU--CGUAGCU-GA-GCGUCGcc -5'
26261 3' -57.3 NC_005345.2 + 41087 0.68 0.481738
Target:  5'- uGCUCGGCG-GCGagcUUGAUcUGCAGCu- -3'
miRNA:   3'- -CGAGCCGCuCGU---AGCUGaGCGUCGcc -5'
26261 3' -57.3 NC_005345.2 + 40730 0.75 0.178369
Target:  5'- cGCUCGGCGuccAGCcgcgccccGUCGAC-CGgCAGCGGc -3'
miRNA:   3'- -CGAGCCGC---UCG--------UAGCUGaGC-GUCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.