miRNA display CGI


Results 1 - 20 of 131 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26261 3' -57.3 NC_005345.2 + 42071 0.8 0.080221
Target:  5'- uGCUCGGCGAcaGCGUCGAgCUaCGCGGCa- -3'
miRNA:   3'- -CGAGCCGCU--CGUAGCU-GA-GCGUCGcc -5'
26261 3' -57.3 NC_005345.2 + 22110 0.7 0.352847
Target:  5'- gGCUCgguGGCGAGCAgcacaGACUCGUcgacGUGGu -3'
miRNA:   3'- -CGAG---CCGCUCGUag---CUGAGCGu---CGCC- -5'
26261 3' -57.3 NC_005345.2 + 15325 0.7 0.378348
Target:  5'- aGgUCGGU--GCGUCGGCcggggCGUAGCGGg -3'
miRNA:   3'- -CgAGCCGcuCGUAGCUGa----GCGUCGCC- -5'
26261 3' -57.3 NC_005345.2 + 33741 0.65 0.626186
Target:  5'- gGCUaCGGCGAGUcgaucgaccaggucAaCGACUCcCuGCGGa -3'
miRNA:   3'- -CGA-GCCGCUCG--------------UaGCUGAGcGuCGCC- -5'
26261 3' -57.3 NC_005345.2 + 27534 0.75 0.178369
Target:  5'- cGCacgCGGCGAucacccgcgGCAUCGGCUCGUcggaccccGGCGGc -3'
miRNA:   3'- -CGa--GCCGCU---------CGUAGCUGAGCG--------UCGCC- -5'
26261 3' -57.3 NC_005345.2 + 44657 0.74 0.208987
Target:  5'- uGCUgCGGUGGGCA-CGGCUCGUcgAGcCGGa -3'
miRNA:   3'- -CGA-GCCGCUCGUaGCUGAGCG--UC-GCC- -5'
26261 3' -57.3 NC_005345.2 + 36088 0.72 0.270699
Target:  5'- uGCUCGGCGGGCugaaagacaagguccUCGACgcggccaagUCGCucuucGGCGGg -3'
miRNA:   3'- -CGAGCCGCUCGu--------------AGCUG---------AGCG-----UCGCC- -5'
26261 3' -57.3 NC_005345.2 + 12198 0.72 0.290941
Target:  5'- aCUCGacgaCGAGCGagGACUCGCcGCGGu -3'
miRNA:   3'- cGAGCc---GCUCGUagCUGAGCGuCGCC- -5'
26261 3' -57.3 NC_005345.2 + 33510 0.71 0.313109
Target:  5'- -aUCGGCGAGCAguccgGGCagGCGGCGa -3'
miRNA:   3'- cgAGCCGCUCGUag---CUGagCGUCGCc -5'
26261 3' -57.3 NC_005345.2 + 8025 0.7 0.352847
Target:  5'- aGCUCGaCGGGC-UCGACcucgCGCAGCu- -3'
miRNA:   3'- -CGAGCcGCUCGuAGCUGa---GCGUCGcc -5'
26261 3' -57.3 NC_005345.2 + 33115 0.71 0.328586
Target:  5'- cGCUCGGCGA-CAaCGACggGCuGUGGg -3'
miRNA:   3'- -CGAGCCGCUcGUaGCUGagCGuCGCC- -5'
26261 3' -57.3 NC_005345.2 + 48563 0.71 0.313109
Target:  5'- gGCgUCGcggauGCGGGCGcCGaugaGCUCGCGGCGGg -3'
miRNA:   3'- -CG-AGC-----CGCUCGUaGC----UGAGCGUCGCC- -5'
26261 3' -57.3 NC_005345.2 + 30161 0.76 0.1518
Target:  5'- cGCUCGGgccgaggcuCGGGCAUCGACgCGUGGCGc -3'
miRNA:   3'- -CGAGCC---------GCUCGUAGCUGaGCGUCGCc -5'
26261 3' -57.3 NC_005345.2 + 33556 0.71 0.334933
Target:  5'- cGCUCGGCGcaGGCcugaaaaccgGACUCGCGGCu- -3'
miRNA:   3'- -CGAGCCGC--UCGuag-------CUGAGCGUCGcc -5'
26261 3' -57.3 NC_005345.2 + 20622 0.76 0.1518
Target:  5'- uCUCGGCGAcgggGCgAUCGAg-CGCAGCGGa -3'
miRNA:   3'- cGAGCCGCU----CG-UAGCUgaGCGUCGCC- -5'
26261 3' -57.3 NC_005345.2 + 29810 0.72 0.290941
Target:  5'- cGCUcgccccCGGCGAGCAgccCGGCaUCGUcGCGGc -3'
miRNA:   3'- -CGA------GCCGCUCGUa--GCUG-AGCGuCGCC- -5'
26261 3' -57.3 NC_005345.2 + 37587 0.71 0.344621
Target:  5'- gGCUgcaGGCGGGCGacCGGCUCGCGuuGCGa -3'
miRNA:   3'- -CGAg--CCGCUCGUa-GCUGAGCGU--CGCc -5'
26261 3' -57.3 NC_005345.2 + 6830 0.7 0.360368
Target:  5'- --aUGGCGGGCGggaUCGACaugguccUCGCGGCGa -3'
miRNA:   3'- cgaGCCGCUCGU---AGCUG-------AGCGUCGCc -5'
26261 3' -57.3 NC_005345.2 + 12616 0.75 0.178369
Target:  5'- cGCUCGGcCGGGCAcggcUCGGgcaccgggcCUCGgAGCGGg -3'
miRNA:   3'- -CGAGCC-GCUCGU----AGCU---------GAGCgUCGCC- -5'
26261 3' -57.3 NC_005345.2 + 35175 0.72 0.270021
Target:  5'- -gUCGGCGcucaAGCccgcguUCGACgggaUCGCAGCGGg -3'
miRNA:   3'- cgAGCCGC----UCGu-----AGCUG----AGCGUCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.