miRNA display CGI


Results 1 - 20 of 131 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26261 3' -57.3 NC_005345.2 + 37725 0.67 0.515369
Target:  5'- cGCUgCGGCGcggcgccggcuggucGGCGUCGucgaggucgagcuGCUCGCccgcaGGCGGc -3'
miRNA:   3'- -CGA-GCCGC---------------UCGUAGC-------------UGAGCG-----UCGCC- -5'
26261 3' -57.3 NC_005345.2 + 10072 0.67 0.553089
Target:  5'- cGUcgCGGCGAGCGUCcACUcgaucgccgccugCGUAGCGc -3'
miRNA:   3'- -CGa-GCCGCUCGUAGcUGA-------------GCGUCGCc -5'
26261 3' -57.3 NC_005345.2 + 27569 0.67 0.553089
Target:  5'- cGUUCGGgGGGcCGUCGGgccguCUCGCGccaacguGCGGc -3'
miRNA:   3'- -CGAGCCgCUC-GUAGCU-----GAGCGU-------CGCC- -5'
26261 3' -57.3 NC_005345.2 + 9176 0.67 0.543573
Target:  5'- aCUCGGCGAGCGUggCGAggaaUCGCGcuguuGcCGGa -3'
miRNA:   3'- cGAGCCGCUCGUA--GCUg---AGCGU-----C-GCC- -5'
26261 3' -57.3 NC_005345.2 + 3024 0.67 0.543573
Target:  5'- aGCcgggCGGCGgcAGCAU--GCUCGCuuGCGGg -3'
miRNA:   3'- -CGa---GCCGC--UCGUAgcUGAGCGu-CGCC- -5'
26261 3' -57.3 NC_005345.2 + 1617 0.67 0.533063
Target:  5'- cGUUCGGUGAuGagGUCGG-UCGCGGCGa -3'
miRNA:   3'- -CGAGCCGCU-Cg-UAGCUgAGCGUCGCc -5'
26261 3' -57.3 NC_005345.2 + 25662 0.67 0.532016
Target:  5'- -gUCGGaCGAGCcgaagugAUCGGCcUGCGGCGa -3'
miRNA:   3'- cgAGCC-GCUCG-------UAGCUGaGCGUCGCc -5'
26261 3' -57.3 NC_005345.2 + 39337 0.67 0.522627
Target:  5'- gGCaUCGGCG-GCAcCGGC-CGCgacacAGCGGc -3'
miRNA:   3'- -CG-AGCCGCuCGUaGCUGaGCG-----UCGCC- -5'
26261 3' -57.3 NC_005345.2 + 15963 0.67 0.522627
Target:  5'- cGUUCGGCGcuGCcaGUUGGCgaugugCGCGGCGu -3'
miRNA:   3'- -CGAGCCGCu-CG--UAGCUGa-----GCGUCGCc -5'
26261 3' -57.3 NC_005345.2 + 37087 0.67 0.56372
Target:  5'- -gUCGGCGAGCGaugaacUCGgcgccggucuccaGCUCGgCAGgGGc -3'
miRNA:   3'- cgAGCCGCUCGU------AGC-------------UGAGC-GUCgCC- -5'
26261 3' -57.3 NC_005345.2 + 37233 0.66 0.575475
Target:  5'- -gUCGGCGgcgugccguaguAGCGggCGACg-GCGGCGGu -3'
miRNA:   3'- cgAGCCGC------------UCGUa-GCUGagCGUCGCC- -5'
26261 3' -57.3 NC_005345.2 + 7512 0.66 0.58621
Target:  5'- aUUCGGUGGGCGU--GCUgccgGCGGCGGu -3'
miRNA:   3'- cGAGCCGCUCGUAgcUGAg---CGUCGCC- -5'
26261 3' -57.3 NC_005345.2 + 26055 0.66 0.618604
Target:  5'- cCUCGGCGAGCGcCuGCUCGaacuGGCu- -3'
miRNA:   3'- cGAGCCGCUCGUaGcUGAGCg---UCGcc -5'
26261 3' -57.3 NC_005345.2 + 28758 0.66 0.618604
Target:  5'- --aCGGCGGGgc-CGGCUCGguGaCGGu -3'
miRNA:   3'- cgaGCCGCUCguaGCUGAGCguC-GCC- -5'
26261 3' -57.3 NC_005345.2 + 38706 0.66 0.607782
Target:  5'- uCUCGGUGAGCugCGcaaCGCGGUGGu -3'
miRNA:   3'- cGAGCCGCUCGuaGCugaGCGUCGCC- -5'
26261 3' -57.3 NC_005345.2 + 36028 0.66 0.596982
Target:  5'- cGCaCGGCGGGCGUuCGAggugaaagCGCGGCa- -3'
miRNA:   3'- -CGaGCCGCUCGUA-GCUga------GCGUCGcc -5'
26261 3' -57.3 NC_005345.2 + 10854 0.66 0.596982
Target:  5'- cGC-CGGCGAGguaguaGUCGACggGCcacugcaaGGCGGg -3'
miRNA:   3'- -CGaGCCGCUCg-----UAGCUGagCG--------UCGCC- -5'
26261 3' -57.3 NC_005345.2 + 45712 0.66 0.596982
Target:  5'- gGCg-GGCGGGgGUCuGCgugCGCAGCGu -3'
miRNA:   3'- -CGagCCGCUCgUAGcUGa--GCGUCGCc -5'
26261 3' -57.3 NC_005345.2 + 35842 0.66 0.596982
Target:  5'- gGCgCGGCGGGUGgcUCGGUUCG-GGCGGg -3'
miRNA:   3'- -CGaGCCGCUCGU--AGCUGAGCgUCGCC- -5'
26261 3' -57.3 NC_005345.2 + 18509 0.66 0.595903
Target:  5'- aGgUCGaGCGAguacgcgGCGUCGGCgucCGgGGCGGu -3'
miRNA:   3'- -CgAGC-CGCU-------CGUAGCUGa--GCgUCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.