miRNA display CGI


Results 1 - 20 of 131 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26261 3' -57.3 NC_005345.2 + 44256 1.11 0.000429
Target:  5'- aGCUCGGCGAGCAUCGACUCGCAGCGGc -3'
miRNA:   3'- -CGAGCCGCUCGUAGCUGAGCGUCGCC- -5'
26261 3' -57.3 NC_005345.2 + 8098 0.82 0.063932
Target:  5'- uGUUCGGCGAGCAgugCGGC-CGCAGCu- -3'
miRNA:   3'- -CGAGCCGCUCGUa--GCUGaGCGUCGcc -5'
26261 3' -57.3 NC_005345.2 + 42071 0.8 0.080221
Target:  5'- uGCUCGGCGAcaGCGUCGAgCUaCGCGGCa- -3'
miRNA:   3'- -CGAGCCGCU--CGUAGCU-GA-GCGUCGcc -5'
26261 3' -57.3 NC_005345.2 + 20622 0.76 0.1518
Target:  5'- uCUCGGCGAcgggGCgAUCGAg-CGCAGCGGa -3'
miRNA:   3'- cGAGCCGCU----CG-UAGCUgaGCGUCGCC- -5'
26261 3' -57.3 NC_005345.2 + 30161 0.76 0.1518
Target:  5'- cGCUCGGgccgaggcuCGGGCAUCGACgCGUGGCGc -3'
miRNA:   3'- -CGAGCC---------GCUCGUAGCUGaGCGUCGCc -5'
26261 3' -57.3 NC_005345.2 + 27534 0.75 0.178369
Target:  5'- cGCacgCGGCGAucacccgcgGCAUCGGCUCGUcggaccccGGCGGc -3'
miRNA:   3'- -CGa--GCCGCU---------CGUAGCUGAGCG--------UCGCC- -5'
26261 3' -57.3 NC_005345.2 + 40730 0.75 0.178369
Target:  5'- cGCUCGGCGuccAGCcgcgccccGUCGAC-CGgCAGCGGc -3'
miRNA:   3'- -CGAGCCGC---UCG--------UAGCUGaGC-GUCGCC- -5'
26261 3' -57.3 NC_005345.2 + 12616 0.75 0.178369
Target:  5'- cGCUCGGcCGGGCAcggcUCGGgcaccgggcCUCGgAGCGGg -3'
miRNA:   3'- -CGAGCC-GCUCGU----AGCU---------GAGCgUCGCC- -5'
26261 3' -57.3 NC_005345.2 + 27904 0.75 0.193147
Target:  5'- aGCUCGGCGAcGCGUUcgGugUCGCuuccgagcGCGGu -3'
miRNA:   3'- -CGAGCCGCU-CGUAG--CugAGCGu-------CGCC- -5'
26261 3' -57.3 NC_005345.2 + 18903 0.74 0.208442
Target:  5'- uGCUCGGCG-GCcgCGAucaugucCUCGCGGCu- -3'
miRNA:   3'- -CGAGCCGCuCGuaGCU-------GAGCGUCGcc -5'
26261 3' -57.3 NC_005345.2 + 44657 0.74 0.208987
Target:  5'- uGCUgCGGUGGGCA-CGGCUCGUcgAGcCGGa -3'
miRNA:   3'- -CGA-GCCGCUCGUaGCUGAGCG--UC-GCC- -5'
26261 3' -57.3 NC_005345.2 + 34739 0.74 0.214511
Target:  5'- cGCcCGGCaGGCGUCGGCgacgUGCAGcCGGa -3'
miRNA:   3'- -CGaGCCGcUCGUAGCUGa---GCGUC-GCC- -5'
26261 3' -57.3 NC_005345.2 + 43297 0.73 0.225352
Target:  5'- cCUCGGCGAG-GUCGACgCGCcacagccggaaccAGCGGg -3'
miRNA:   3'- cGAGCCGCUCgUAGCUGaGCG-------------UCGCC- -5'
26261 3' -57.3 NC_005345.2 + 36339 0.73 0.231839
Target:  5'- gGCgaacCGGCGGGCcgagCGGCUCG-GGCGGg -3'
miRNA:   3'- -CGa---GCCGCUCGua--GCUGAGCgUCGCC- -5'
26261 3' -57.3 NC_005345.2 + 30226 0.73 0.237871
Target:  5'- cGCgcauccggCGGUGAGCcgGUCGACgaCGguGCGGg -3'
miRNA:   3'- -CGa-------GCCGCUCG--UAGCUGa-GCguCGCC- -5'
26261 3' -57.3 NC_005345.2 + 44038 0.72 0.263322
Target:  5'- cGCcguaGGaGGGCAUCGggaugccgcGCUCGCGGCGGa -3'
miRNA:   3'- -CGag--CCgCUCGUAGC---------UGAGCGUCGCC- -5'
26261 3' -57.3 NC_005345.2 + 35175 0.72 0.270021
Target:  5'- -gUCGGCGcucaAGCccgcguUCGACgggaUCGCAGCGGg -3'
miRNA:   3'- cgAGCCGC----UCGu-----AGCUG----AGCGUCGCC- -5'
26261 3' -57.3 NC_005345.2 + 36088 0.72 0.270699
Target:  5'- uGCUCGGCGGGCugaaagacaagguccUCGACgcggccaagUCGCucuucGGCGGg -3'
miRNA:   3'- -CGAGCCGCUCGu--------------AGCUG---------AGCG-----UCGCC- -5'
26261 3' -57.3 NC_005345.2 + 3430 0.72 0.290224
Target:  5'- cGCggCGGCGGGCggCGaugcgggccccgaGCUCGC-GCGGg -3'
miRNA:   3'- -CGa-GCCGCUCGuaGC-------------UGAGCGuCGCC- -5'
26261 3' -57.3 NC_005345.2 + 12198 0.72 0.290941
Target:  5'- aCUCGacgaCGAGCGagGACUCGCcGCGGu -3'
miRNA:   3'- cGAGCc---GCUCGUagCUGAGCGuCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.