miRNA display CGI


Results 21 - 40 of 131 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26261 3' -57.3 NC_005345.2 + 29810 0.72 0.290941
Target:  5'- cGCUcgccccCGGCGAGCAgccCGGCaUCGUcGCGGc -3'
miRNA:   3'- -CGA------GCCGCUCGUa--GCUG-AGCGuCGCC- -5'
26261 3' -57.3 NC_005345.2 + 18935 0.71 0.305581
Target:  5'- cGCgUCGGCGucGaCGUUGAuCUCGUGGCGGc -3'
miRNA:   3'- -CG-AGCCGCu-C-GUAGCU-GAGCGUCGCC- -5'
26261 3' -57.3 NC_005345.2 + 33510 0.71 0.313109
Target:  5'- -aUCGGCGAGCAguccgGGCagGCGGCGa -3'
miRNA:   3'- cgAGCCGCUCGUag---CUGagCGUCGCc -5'
26261 3' -57.3 NC_005345.2 + 48563 0.71 0.313109
Target:  5'- gGCgUCGcggauGCGGGCGcCGaugaGCUCGCGGCGGg -3'
miRNA:   3'- -CG-AGC-----CGCUCGUaGC----UGAGCGUCGCC- -5'
26261 3' -57.3 NC_005345.2 + 38403 0.71 0.320778
Target:  5'- gGCUCGGCGucGGCGaCGACaUCGagcGCGGc -3'
miRNA:   3'- -CGAGCCGC--UCGUaGCUG-AGCgu-CGCC- -5'
26261 3' -57.3 NC_005345.2 + 24205 0.71 0.328586
Target:  5'- -gUCGGggcCGAGU-UCGAgUCGCGGCGGc -3'
miRNA:   3'- cgAGCC---GCUCGuAGCUgAGCGUCGCC- -5'
26261 3' -57.3 NC_005345.2 + 33115 0.71 0.328586
Target:  5'- cGCUCGGCGA-CAaCGACggGCuGUGGg -3'
miRNA:   3'- -CGAGCCGCUcGUaGCUGagCGuCGCC- -5'
26261 3' -57.3 NC_005345.2 + 18153 0.71 0.328586
Target:  5'- --cCGGCGucggguacAGCcUCGGCUCGguGUGGg -3'
miRNA:   3'- cgaGCCGC--------UCGuAGCUGAGCguCGCC- -5'
26261 3' -57.3 NC_005345.2 + 33556 0.71 0.334933
Target:  5'- cGCUCGGCGcaGGCcugaaaaccgGACUCGCGGCu- -3'
miRNA:   3'- -CGAGCCGC--UCGuag-------CUGAGCGUCGcc -5'
26261 3' -57.3 NC_005345.2 + 43850 0.71 0.336534
Target:  5'- uGCcCGGUcgacgGGGCGUCGGCcgggacucCGCGGCGGa -3'
miRNA:   3'- -CGaGCCG-----CUCGUAGCUGa-------GCGUCGCC- -5'
26261 3' -57.3 NC_005345.2 + 30676 0.71 0.344621
Target:  5'- --gCGGCGAGCAucuUCGGgUCGCGGgaccCGGu -3'
miRNA:   3'- cgaGCCGCUCGU---AGCUgAGCGUC----GCC- -5'
26261 3' -57.3 NC_005345.2 + 40249 0.71 0.344621
Target:  5'- --cUGGCGAGCGggGACggggCGCcGGCGGg -3'
miRNA:   3'- cgaGCCGCUCGUagCUGa---GCG-UCGCC- -5'
26261 3' -57.3 NC_005345.2 + 37587 0.71 0.344621
Target:  5'- gGCUgcaGGCGGGCGacCGGCUCGCGuuGCGa -3'
miRNA:   3'- -CGAg--CCGCUCGUa-GCUGAGCGU--CGCc -5'
26261 3' -57.3 NC_005345.2 + 8025 0.7 0.352847
Target:  5'- aGCUCGaCGGGC-UCGACcucgCGCAGCu- -3'
miRNA:   3'- -CGAGCcGCUCGuAGCUGa---GCGUCGcc -5'
26261 3' -57.3 NC_005345.2 + 22110 0.7 0.352847
Target:  5'- gGCUCgguGGCGAGCAgcacaGACUCGUcgacGUGGu -3'
miRNA:   3'- -CGAG---CCGCUCGUag---CUGAGCGu---CGCC- -5'
26261 3' -57.3 NC_005345.2 + 6830 0.7 0.360368
Target:  5'- --aUGGCGGGCGggaUCGACaugguccUCGCGGCGa -3'
miRNA:   3'- cgaGCCGCUCGU---AGCUG-------AGCGUCGCc -5'
26261 3' -57.3 NC_005345.2 + 23555 0.7 0.361211
Target:  5'- uGCUCGGCGuucuucggcAGCAcCGGCa-GCuGCGGg -3'
miRNA:   3'- -CGAGCCGC---------UCGUaGCUGagCGuCGCC- -5'
26261 3' -57.3 NC_005345.2 + 27186 0.7 0.369712
Target:  5'- gGCaUCGGCGcgGGCcgUGAUcgGCAGCGGg -3'
miRNA:   3'- -CG-AGCCGC--UCGuaGCUGagCGUCGCC- -5'
26261 3' -57.3 NC_005345.2 + 39418 0.7 0.378348
Target:  5'- aGCgUCGGCGcGGUcgCGGCccgCGCGGCGcGg -3'
miRNA:   3'- -CG-AGCCGC-UCGuaGCUGa--GCGUCGC-C- -5'
26261 3' -57.3 NC_005345.2 + 22247 0.7 0.378348
Target:  5'- cGgUCGGCGAGCGcCGcCU-GCAGCGc -3'
miRNA:   3'- -CgAGCCGCUCGUaGCuGAgCGUCGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.