miRNA display CGI


Results 41 - 60 of 131 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26261 3' -57.3 NC_005345.2 + 18153 0.71 0.328586
Target:  5'- --cCGGCGucggguacAGCcUCGGCUCGguGUGGg -3'
miRNA:   3'- cgaGCCGC--------UCGuAGCUGAGCguCGCC- -5'
26261 3' -57.3 NC_005345.2 + 18509 0.66 0.595903
Target:  5'- aGgUCGaGCGAguacgcgGCGUCGGCgucCGgGGCGGu -3'
miRNA:   3'- -CgAGC-CGCU-------CGUAGCUGa--GCgUCGCC- -5'
26261 3' -57.3 NC_005345.2 + 18903 0.74 0.208442
Target:  5'- uGCUCGGCG-GCcgCGAucaugucCUCGCGGCu- -3'
miRNA:   3'- -CGAGCCGCuCGuaGCU-------GAGCGUCGcc -5'
26261 3' -57.3 NC_005345.2 + 18935 0.71 0.305581
Target:  5'- cGCgUCGGCGucGaCGUUGAuCUCGUGGCGGc -3'
miRNA:   3'- -CG-AGCCGCu-C-GUAGCU-GAGCGUCGCC- -5'
26261 3' -57.3 NC_005345.2 + 19414 0.68 0.500978
Target:  5'- aGCUCGGuCGGcugcgccGCGUCGG-UCGCAcCGGg -3'
miRNA:   3'- -CGAGCC-GCU-------CGUAGCUgAGCGUcGCC- -5'
26261 3' -57.3 NC_005345.2 + 19796 0.66 0.612109
Target:  5'- gGCUCGGCuacgccgacggcgacGAGCGcUGACaccCGgGGCGGc -3'
miRNA:   3'- -CGAGCCG---------------CUCGUaGCUGa--GCgUCGCC- -5'
26261 3' -57.3 NC_005345.2 + 19954 0.69 0.414223
Target:  5'- aGCUUcccaGGCGcAGCcgGUCGuACUCGUucAGCGGg -3'
miRNA:   3'- -CGAG----CCGC-UCG--UAGC-UGAGCG--UCGCC- -5'
26261 3' -57.3 NC_005345.2 + 20622 0.76 0.1518
Target:  5'- uCUCGGCGAcgggGCgAUCGAg-CGCAGCGGa -3'
miRNA:   3'- cGAGCCGCU----CG-UAGCUgaGCGUCGCC- -5'
26261 3' -57.3 NC_005345.2 + 22048 0.66 0.58621
Target:  5'- aGCUCa-CGAGC--CGAC-CGCGGUGGg -3'
miRNA:   3'- -CGAGccGCUCGuaGCUGaGCGUCGCC- -5'
26261 3' -57.3 NC_005345.2 + 22110 0.7 0.352847
Target:  5'- gGCUCgguGGCGAGCAgcacaGACUCGUcgacGUGGu -3'
miRNA:   3'- -CGAG---CCGCUCGUag---CUGAGCGu---CGCC- -5'
26261 3' -57.3 NC_005345.2 + 22247 0.7 0.378348
Target:  5'- cGgUCGGCGAGCGcCGcCU-GCAGCGc -3'
miRNA:   3'- -CgAGCCGCUCGUaGCuGAgCGUCGCc -5'
26261 3' -57.3 NC_005345.2 + 22315 0.68 0.478732
Target:  5'- cGCUCGGCGcgccgggugccggcAGCAgugaugCGGCgaGCAGCGc -3'
miRNA:   3'- -CGAGCCGC--------------UCGUa-----GCUGagCGUCGCc -5'
26261 3' -57.3 NC_005345.2 + 22665 0.67 0.533063
Target:  5'- uGCggaCGGuCGGGCAgUCG-CUCGUcguGGCGGu -3'
miRNA:   3'- -CGa--GCC-GCUCGU-AGCuGAGCG---UCGCC- -5'
26261 3' -57.3 NC_005345.2 + 23555 0.7 0.361211
Target:  5'- uGCUCGGCGuucuucggcAGCAcCGGCa-GCuGCGGg -3'
miRNA:   3'- -CGAGCCGC---------UCGUaGCUGagCGuCGCC- -5'
26261 3' -57.3 NC_005345.2 + 24065 0.69 0.423513
Target:  5'- cGCguaCGGCGAGCcgAUCGgccggccguggcACUCGguGCGu -3'
miRNA:   3'- -CGa--GCCGCUCG--UAGC------------UGAGCguCGCc -5'
26261 3' -57.3 NC_005345.2 + 24205 0.71 0.328586
Target:  5'- -gUCGGggcCGAGU-UCGAgUCGCGGCGGc -3'
miRNA:   3'- cgAGCC---GCUCGuAGCUgAGCGUCGCC- -5'
26261 3' -57.3 NC_005345.2 + 24346 0.67 0.512271
Target:  5'- --aCGGCGGGaucCGGCUCGCGaagaccauGCGGu -3'
miRNA:   3'- cgaGCCGCUCguaGCUGAGCGU--------CGCC- -5'
26261 3' -57.3 NC_005345.2 + 24391 0.66 0.618604
Target:  5'- aGCUCGGCGgcAGCAucaUCGAgaCGCcgaacGCGu -3'
miRNA:   3'- -CGAGCCGC--UCGU---AGCUgaGCGu----CGCc -5'
26261 3' -57.3 NC_005345.2 + 24829 0.67 0.543573
Target:  5'- uGCUCGG-GuuCGaCGGCUCGCgcaAGCGGu -3'
miRNA:   3'- -CGAGCCgCucGUaGCUGAGCG---UCGCC- -5'
26261 3' -57.3 NC_005345.2 + 25139 0.69 0.414223
Target:  5'- cCUCGGCGAGCG-CGAUcgCGCcgacgaacGGCGa -3'
miRNA:   3'- cGAGCCGCUCGUaGCUGa-GCG--------UCGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.