miRNA display CGI


Results 41 - 60 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26262 3' -61.6 NC_005345.2 + 15040 0.67 0.335155
Target:  5'- cGCGUCGGcggcGAUGUCGCcgUCGCgGGCGc -3'
miRNA:   3'- cCGUAGCC----CUACGGCGcgAGCG-CCGC- -5'
26262 3' -61.6 NC_005345.2 + 29960 0.67 0.335155
Target:  5'- gGGcCGUCGGGcucGUCGUcgagggGCUCGuCGGCGu -3'
miRNA:   3'- -CC-GUAGCCCua-CGGCG------CGAGC-GCCGC- -5'
26262 3' -61.6 NC_005345.2 + 20729 0.67 0.330496
Target:  5'- cGGCccUCGGcGAccgauccgcccugccUGCCGCuGCcgcCGCGGCGg -3'
miRNA:   3'- -CCGu-AGCC-CU---------------ACGGCG-CGa--GCGCCGC- -5'
26262 3' -61.6 NC_005345.2 + 38958 0.67 0.330496
Target:  5'- cGGCAU-GGGAUcacuuccucuuucgcGuuGCcuguuGCUUGCGGCGg -3'
miRNA:   3'- -CCGUAgCCCUA---------------CggCG-----CGAGCGCCGC- -5'
26262 3' -61.6 NC_005345.2 + 31347 0.67 0.327417
Target:  5'- cGGCA--GGGAUGauCCG-GCUCGgGGUGa -3'
miRNA:   3'- -CCGUagCCCUAC--GGCgCGAGCgCCGC- -5'
26262 3' -61.6 NC_005345.2 + 35093 0.67 0.327417
Target:  5'- aGGUucUCGGcGGUGgUGCGggCGUGGCGg -3'
miRNA:   3'- -CCGu-AGCC-CUACgGCGCgaGCGCCGC- -5'
26262 3' -61.6 NC_005345.2 + 15343 0.67 0.327417
Target:  5'- gGGCGUagCGGGuGUGCgGCGaaguagGCGGCGa -3'
miRNA:   3'- -CCGUA--GCCC-UACGgCGCgag---CGCCGC- -5'
26262 3' -61.6 NC_005345.2 + 35907 0.67 0.327417
Target:  5'- cGGCAUCGucGGGUgGCuCG-GgaCGCGGCGa -3'
miRNA:   3'- -CCGUAGC--CCUA-CG-GCgCgaGCGCCGC- -5'
26262 3' -61.6 NC_005345.2 + 19325 0.67 0.327417
Target:  5'- uGGCcgCGacGAUGCCGggcUGCUCGCcgggGGCGa -3'
miRNA:   3'- -CCGuaGCc-CUACGGC---GCGAGCG----CCGC- -5'
26262 3' -61.6 NC_005345.2 + 39882 0.67 0.319813
Target:  5'- cGGCcgacaugCGGGAcuugucgGCCGCaccguGgUCGCGGCGu -3'
miRNA:   3'- -CCGua-----GCCCUa------CGGCG-----CgAGCGCCGC- -5'
26262 3' -61.6 NC_005345.2 + 18898 0.67 0.312342
Target:  5'- cGGCcugcUCGGcg-GCCGCGaucaugucCUCGCGGCu -3'
miRNA:   3'- -CCGu---AGCCcuaCGGCGC--------GAGCGCCGc -5'
26262 3' -61.6 NC_005345.2 + 47149 0.67 0.312342
Target:  5'- aGCGagGGGGcgcugugagcGCCGC-CUCGCGGCa -3'
miRNA:   3'- cCGUagCCCUa---------CGGCGcGAGCGCCGc -5'
26262 3' -61.6 NC_005345.2 + 21531 0.67 0.312342
Target:  5'- aGCAgCGGaccGAUcucGCCGUGCUCGCGcGUGa -3'
miRNA:   3'- cCGUaGCC---CUA---CGGCGCGAGCGC-CGC- -5'
26262 3' -61.6 NC_005345.2 + 40604 0.67 0.311602
Target:  5'- cGGCGagcaCGGGGUGuaccucuCCGCGagcCGCGGCa -3'
miRNA:   3'- -CCGUa---GCCCUAC-------GGCGCga-GCGCCGc -5'
26262 3' -61.6 NC_005345.2 + 39460 0.67 0.310864
Target:  5'- cGGCccgcugAUCGGccugcagccgGCgGCGCUCGCGGUa -3'
miRNA:   3'- -CCG------UAGCCcua-------CGgCGCGAGCGCCGc -5'
26262 3' -61.6 NC_005345.2 + 41350 0.68 0.305004
Target:  5'- cGGCGUCcGGcgGCgGCGCagCGCucGGCa -3'
miRNA:   3'- -CCGUAGcCCuaCGgCGCGa-GCG--CCGc -5'
26262 3' -61.6 NC_005345.2 + 5641 0.68 0.305004
Target:  5'- aGCGcCGGGuucGCCGCGaccuUgGCGGCGa -3'
miRNA:   3'- cCGUaGCCCua-CGGCGCg---AgCGCCGC- -5'
26262 3' -61.6 NC_005345.2 + 9357 0.68 0.297799
Target:  5'- uGGCugCGGGcgGCCGgGCUCGaccacuacgGGCa -3'
miRNA:   3'- -CCGuaGCCCuaCGGCgCGAGCg--------CCGc -5'
26262 3' -61.6 NC_005345.2 + 21747 0.68 0.290727
Target:  5'- cGGCc-CGGGAggGCCccuguGCuGCUCGCuGGCGg -3'
miRNA:   3'- -CCGuaGCCCUa-CGG-----CG-CGAGCG-CCGC- -5'
26262 3' -61.6 NC_005345.2 + 26957 0.68 0.290727
Target:  5'- cGGCugAUCGGGu--UCGUcCUCGCGGCGu -3'
miRNA:   3'- -CCG--UAGCCCuacGGCGcGAGCGCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.