miRNA display CGI


Results 21 - 40 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26262 3' -61.6 NC_005345.2 + 48024 0.66 0.375821
Target:  5'- aGGCuccgGGGAggcuacgcgGCUGUGCUCGUccGGCGc -3'
miRNA:   3'- -CCGuag-CCCUa--------CGGCGCGAGCG--CCGC- -5'
26262 3' -61.6 NC_005345.2 + 18201 0.66 0.375821
Target:  5'- aGGCGcgcgccgagUGGGgcGCCGCGUUCG-GGUa -3'
miRNA:   3'- -CCGUa--------GCCCuaCGGCGCGAGCgCCGc -5'
26262 3' -61.6 NC_005345.2 + 22081 0.66 0.375821
Target:  5'- cGCGUCGGuGAucUGCCccaucuGCGCcugCGUGGCc -3'
miRNA:   3'- cCGUAGCC-CU--ACGG------CGCGa--GCGCCGc -5'
26262 3' -61.6 NC_005345.2 + 18154 0.66 0.375821
Target:  5'- cGGCGUCGGGuacaGCCuCGgCUCGgugugGGCGu -3'
miRNA:   3'- -CCGUAGCCCua--CGGcGC-GAGCg----CCGC- -5'
26262 3' -61.6 NC_005345.2 + 31752 0.66 0.375821
Target:  5'- uGCGggugCGGGGUGCgagUGCGuCUCGgGuGCGg -3'
miRNA:   3'- cCGUa---GCCCUACG---GCGC-GAGCgC-CGC- -5'
26262 3' -61.6 NC_005345.2 + 45079 0.66 0.373289
Target:  5'- uGGC-UCGGcGcaccgaggcauaccGUGUCgGCGCUCGuCGGCGc -3'
miRNA:   3'- -CCGuAGCC-C--------------UACGG-CGCGAGC-GCCGC- -5'
26262 3' -61.6 NC_005345.2 + 24196 0.66 0.359161
Target:  5'- cGGCcgcccGUCGGG--GCCGaGUucgagUCGCGGCGg -3'
miRNA:   3'- -CCG-----UAGCCCuaCGGCgCG-----AGCGCCGC- -5'
26262 3' -61.6 NC_005345.2 + 42659 0.66 0.359161
Target:  5'- cGGCGuccacgccUCGGGcucGCCGCcguacaGCUCGgCGGCc -3'
miRNA:   3'- -CCGU--------AGCCCua-CGGCG------CGAGC-GCCGc -5'
26262 3' -61.6 NC_005345.2 + 22294 0.66 0.359161
Target:  5'- cGCuGUCGGGcacguUGcCCGCGCUCgGCGcGCc -3'
miRNA:   3'- cCG-UAGCCCu----AC-GGCGCGAG-CGC-CGc -5'
26262 3' -61.6 NC_005345.2 + 28184 0.66 0.359161
Target:  5'- gGGC-UCGGGGUGUC-UGUUC-CGGCa -3'
miRNA:   3'- -CCGuAGCCCUACGGcGCGAGcGCCGc -5'
26262 3' -61.6 NC_005345.2 + 43854 0.67 0.351027
Target:  5'- cGGuCGaCGGGGcgucgGCCGgGaCUcCGCGGCGg -3'
miRNA:   3'- -CC-GUaGCCCUa----CGGCgC-GA-GCGCCGC- -5'
26262 3' -61.6 NC_005345.2 + 38699 0.67 0.351027
Target:  5'- cGCAgaaucUCGGuGA-GCUGCGCaaCGCGGUGg -3'
miRNA:   3'- cCGU-----AGCC-CUaCGGCGCGa-GCGCCGC- -5'
26262 3' -61.6 NC_005345.2 + 13492 0.67 0.351027
Target:  5'- cGCGUCGG--UGCgGUGg-CGCGGCGa -3'
miRNA:   3'- cCGUAGCCcuACGgCGCgaGCGCCGC- -5'
26262 3' -61.6 NC_005345.2 + 32118 0.67 0.351027
Target:  5'- cGCGUgGGGcgG-CGUGCUCGUucgcacGGCGa -3'
miRNA:   3'- cCGUAgCCCuaCgGCGCGAGCG------CCGC- -5'
26262 3' -61.6 NC_005345.2 + 2998 0.67 0.351027
Target:  5'- cGGCGguaCGGGcgGCCGaggccaguaGCcggGCGGCGg -3'
miRNA:   3'- -CCGUa--GCCCuaCGGCg--------CGag-CGCCGC- -5'
26262 3' -61.6 NC_005345.2 + 5220 0.67 0.34621
Target:  5'- cGGCgcuacacgccGUCGGGGUGCCcgcgguacacgguggGCGUgacggGCGGCa -3'
miRNA:   3'- -CCG----------UAGCCCUACGG---------------CGCGag---CGCCGc -5'
26262 3' -61.6 NC_005345.2 + 23759 0.67 0.343025
Target:  5'- aGCAagGGGGcgucaUGCCGUGg-CGCGGCc -3'
miRNA:   3'- cCGUagCCCU-----ACGGCGCgaGCGCCGc -5'
26262 3' -61.6 NC_005345.2 + 46074 0.67 0.343025
Target:  5'- aGGCGgcCGGGGccgccgggGCCuGCGCggacauccaCGCGGCGa -3'
miRNA:   3'- -CCGUa-GCCCUa-------CGG-CGCGa--------GCGCCGC- -5'
26262 3' -61.6 NC_005345.2 + 35006 0.67 0.335155
Target:  5'- gGGCgGUCGGcGAcgcUGCCGUGUggcUGUGGCa -3'
miRNA:   3'- -CCG-UAGCC-CU---ACGGCGCGa--GCGCCGc -5'
26262 3' -61.6 NC_005345.2 + 29960 0.67 0.335155
Target:  5'- gGGcCGUCGGGcucGUCGUcgagggGCUCGuCGGCGu -3'
miRNA:   3'- -CC-GUAGCCCua-CGGCG------CGAGC-GCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.