miRNA display CGI


Results 21 - 40 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26262 3' -61.6 NC_005345.2 + 14933 0.68 0.276979
Target:  5'- nGGCugcagCGGGcgGCggcgaaggauCGCGC-CGCGGCu -3'
miRNA:   3'- -CCGua---GCCCuaCG----------GCGCGaGCGCCGc -5'
26262 3' -61.6 NC_005345.2 + 32823 0.68 0.270301
Target:  5'- aGGCAcUCGGGAagcaguggGCCGaGUUCGaGGCGa -3'
miRNA:   3'- -CCGU-AGCCCUa-------CGGCgCGAGCgCCGC- -5'
26262 3' -61.6 NC_005345.2 + 26588 0.71 0.180383
Target:  5'- gGGC-UCGaaucGGUGCuCGCGCUCGCuGCGg -3'
miRNA:   3'- -CCGuAGCc---CUACG-GCGCGAGCGcCGC- -5'
26262 3' -61.6 NC_005345.2 + 27142 0.74 0.103044
Target:  5'- cGGCGUCGaGcUGCCcgagGCGCUgCGCGGCGu -3'
miRNA:   3'- -CCGUAGCcCuACGG----CGCGA-GCGCCGC- -5'
26262 3' -61.6 NC_005345.2 + 23759 0.67 0.343025
Target:  5'- aGCAagGGGGcgucaUGCCGUGg-CGCGGCc -3'
miRNA:   3'- cCGUagCCCU-----ACGGCGCgaGCGCCGc -5'
26262 3' -61.6 NC_005345.2 + 9357 0.68 0.297799
Target:  5'- uGGCugCGGGcgGCCGgGCUCGaccacuacgGGCa -3'
miRNA:   3'- -CCGuaGCCCuaCGGCgCGAGCg--------CCGc -5'
26262 3' -61.6 NC_005345.2 + 4251 0.69 0.257337
Target:  5'- uGCGgagCGGGAcgaggccacguUGCUGCGcCUCGCGacGCGg -3'
miRNA:   3'- cCGUa--GCCCU-----------ACGGCGC-GAGCGC--CGC- -5'
26262 3' -61.6 NC_005345.2 + 5604 0.76 0.078334
Target:  5'- uGCcgUGGGgcGCCGgGCUCGUGGCc -3'
miRNA:   3'- cCGuaGCCCuaCGGCgCGAGCGCCGc -5'
26262 3' -61.6 NC_005345.2 + 21747 0.68 0.290727
Target:  5'- cGGCc-CGGGAggGCCccuguGCuGCUCGCuGGCGg -3'
miRNA:   3'- -CCGuaGCCCUa-CGG-----CG-CGAGCG-CCGC- -5'
26262 3' -61.6 NC_005345.2 + 44545 0.8 0.037888
Target:  5'- gGGCAaCGGGAacaggaccgcGCUGCGUUCGCGGCGa -3'
miRNA:   3'- -CCGUaGCCCUa---------CGGCGCGAGCGCCGC- -5'
26262 3' -61.6 NC_005345.2 + 3634 0.68 0.263754
Target:  5'- uGCAagCGGGcgaagaGUGUCGCGgaCGCGGCc -3'
miRNA:   3'- cCGUa-GCCC------UACGGCGCgaGCGCCGc -5'
26262 3' -61.6 NC_005345.2 + 11602 0.68 0.283787
Target:  5'- uGGCGUgGGGcgGCCGCugGCgggaGUGGgCGg -3'
miRNA:   3'- -CCGUAgCCCuaCGGCG--CGag--CGCC-GC- -5'
26262 3' -61.6 NC_005345.2 + 14676 0.69 0.22715
Target:  5'- cGGCGUcgccgaugcCGGGccgGCCGUGCcCGUGGUGu -3'
miRNA:   3'- -CCGUA---------GCCCua-CGGCGCGaGCGCCGC- -5'
26262 3' -61.6 NC_005345.2 + 23710 0.7 0.210515
Target:  5'- cGGUA-CGGGGcuCUGCGCUCGCuuccuGGCGg -3'
miRNA:   3'- -CCGUaGCCCUacGGCGCGAGCG-----CCGC- -5'
26262 3' -61.6 NC_005345.2 + 38573 0.72 0.158256
Target:  5'- cGGCA-CGGcGuacGUgGCGCUCGCGGCc -3'
miRNA:   3'- -CCGUaGCC-Cua-CGgCGCGAGCGCCGc -5'
26262 3' -61.6 NC_005345.2 + 10679 0.73 0.140096
Target:  5'- cGGCG-CGGGAagUGcCCGCGCUgugcccggccuguccUGCGGCa -3'
miRNA:   3'- -CCGUaGCCCU--AC-GGCGCGA---------------GCGCCGc -5'
26262 3' -61.6 NC_005345.2 + 48024 0.66 0.375821
Target:  5'- aGGCuccgGGGAggcuacgcgGCUGUGCUCGUccGGCGc -3'
miRNA:   3'- -CCGuag-CCCUa--------CGGCGCGAGCG--CCGC- -5'
26262 3' -61.6 NC_005345.2 + 13492 0.67 0.351027
Target:  5'- cGCGUCGG--UGCgGUGg-CGCGGCGa -3'
miRNA:   3'- cCGUAGCCcuACGgCGCgaGCGCCGC- -5'
26262 3' -61.6 NC_005345.2 + 15343 0.67 0.327417
Target:  5'- gGGCGUagCGGGuGUGCgGCGaaguagGCGGCGa -3'
miRNA:   3'- -CCGUA--GCCC-UACGgCGCgag---CGCCGC- -5'
26262 3' -61.6 NC_005345.2 + 41350 0.68 0.305004
Target:  5'- cGGCGUCcGGcgGCgGCGCagCGCucGGCa -3'
miRNA:   3'- -CCGUAGcCCuaCGgCGCGa-GCG--CCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.