miRNA display CGI


Results 21 - 40 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26262 3' -61.6 NC_005345.2 + 9357 0.68 0.297799
Target:  5'- uGGCugCGGGcgGCCGgGCUCGaccacuacgGGCa -3'
miRNA:   3'- -CCGuaGCCCuaCGGCgCGAGCg--------CCGc -5'
26262 3' -61.6 NC_005345.2 + 10679 0.73 0.140096
Target:  5'- cGGCG-CGGGAagUGcCCGCGCUgugcccggccuguccUGCGGCa -3'
miRNA:   3'- -CCGUaGCCCU--AC-GGCGCGA---------------GCGCCGc -5'
26262 3' -61.6 NC_005345.2 + 10776 0.69 0.232938
Target:  5'- cGGcCGUCGaGAcaGCCGCGCU-GCGGCa -3'
miRNA:   3'- -CC-GUAGCcCUa-CGGCGCGAgCGCCGc -5'
26262 3' -61.6 NC_005345.2 + 11602 0.68 0.283787
Target:  5'- uGGCGUgGGGcgGCCGCugGCgggaGUGGgCGg -3'
miRNA:   3'- -CCGUAgCCCuaCGGCG--CGag--CGCC-GC- -5'
26262 3' -61.6 NC_005345.2 + 12147 0.68 0.270301
Target:  5'- cGGCAUgccgaGGGA-GCUGCGCaCGgGGCu -3'
miRNA:   3'- -CCGUAg----CCCUaCGGCGCGaGCgCCGc -5'
26262 3' -61.6 NC_005345.2 + 12296 0.66 0.401771
Target:  5'- cGC-UCGGGAucgagUGCCcCGagugCGCGGCGc -3'
miRNA:   3'- cCGuAGCCCU-----ACGGcGCga--GCGCCGC- -5'
26262 3' -61.6 NC_005345.2 + 12776 0.68 0.263754
Target:  5'- cGGCcgCGGaGcgcGcCCGCGUaCGCGGCGa -3'
miRNA:   3'- -CCGuaGCC-Cua-C-GGCGCGaGCGCCGC- -5'
26262 3' -61.6 NC_005345.2 + 13399 0.75 0.089886
Target:  5'- uGCccCGGGAUGCCGcCGCUCGUucggccgccgcgGGCGa -3'
miRNA:   3'- cCGuaGCCCUACGGC-GCGAGCG------------CCGC- -5'
26262 3' -61.6 NC_005345.2 + 13492 0.67 0.351027
Target:  5'- cGCGUCGG--UGCgGUGg-CGCGGCGa -3'
miRNA:   3'- cCGUAGCCcuACGgCGCgaGCGCCGC- -5'
26262 3' -61.6 NC_005345.2 + 14676 0.69 0.22715
Target:  5'- cGGCGUcgccgaugcCGGGccgGCCGUGCcCGUGGUGu -3'
miRNA:   3'- -CCGUA---------GCCCua-CGGCGCGaGCGCCGC- -5'
26262 3' -61.6 NC_005345.2 + 14898 0.72 0.154135
Target:  5'- aGGCGgagcagCGGGcgaagcggGCCGCGg-CGCGGCGg -3'
miRNA:   3'- -CCGUa-----GCCCua------CGGCGCgaGCGCCGC- -5'
26262 3' -61.6 NC_005345.2 + 14899 0.71 0.17122
Target:  5'- gGGUcagGUCGaGGA--CCGCGUUCGCGGCc -3'
miRNA:   3'- -CCG---UAGC-CCUacGGCGCGAGCGCCGc -5'
26262 3' -61.6 NC_005345.2 + 14933 0.68 0.276979
Target:  5'- nGGCugcagCGGGcgGCggcgaaggauCGCGC-CGCGGCu -3'
miRNA:   3'- -CCGua---GCCCuaCG----------GCGCGaGCGCCGc -5'
26262 3' -61.6 NC_005345.2 + 15040 0.67 0.335155
Target:  5'- cGCGUCGGcggcGAUGUCGCcgUCGCgGGCGc -3'
miRNA:   3'- cCGUAGCC----CUACGGCGcgAGCG-CCGC- -5'
26262 3' -61.6 NC_005345.2 + 15343 0.67 0.327417
Target:  5'- gGGCGUagCGGGuGUGCgGCGaaguagGCGGCGa -3'
miRNA:   3'- -CCGUA--GCCC-UACGgCGCgag---CGCCGC- -5'
26262 3' -61.6 NC_005345.2 + 15843 0.68 0.263754
Target:  5'- gGGCG-CGG---GCC-CGCUCGCGGUGg -3'
miRNA:   3'- -CCGUaGCCcuaCGGcGCGAGCGCCGC- -5'
26262 3' -61.6 NC_005345.2 + 16354 0.71 0.180383
Target:  5'- cGGCAUCGcg--GCCgGCGC-CGCGGUGa -3'
miRNA:   3'- -CCGUAGCccuaCGG-CGCGaGCGCCGC- -5'
26262 3' -61.6 NC_005345.2 + 17489 0.73 0.13861
Target:  5'- cGGCGUCGGGAaggaacugcggGCCGcCGgUCGcCGGCc -3'
miRNA:   3'- -CCGUAGCCCUa----------CGGC-GCgAGC-GCCGc -5'
26262 3' -61.6 NC_005345.2 + 17956 0.66 0.384344
Target:  5'- cGGCGuccgcUCGGccgccUGCCGgGC-CGCGGCc -3'
miRNA:   3'- -CCGU-----AGCCcu---ACGGCgCGaGCGCCGc -5'
26262 3' -61.6 NC_005345.2 + 18154 0.66 0.375821
Target:  5'- cGGCGUCGGGuacaGCCuCGgCUCGgugugGGCGu -3'
miRNA:   3'- -CCGUAGCCCua--CGGcGC-GAGCg----CCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.