miRNA display CGI


Results 1 - 20 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26262 3' -61.6 NC_005345.2 + 1615 0.66 0.401771
Target:  5'- cGCGuUCGGuGAUGagGuCGgUCGCGGCGa -3'
miRNA:   3'- cCGU-AGCC-CUACggC-GCgAGCGCCGC- -5'
26262 3' -61.6 NC_005345.2 + 1648 0.68 0.283787
Target:  5'- uGGCAggCaGGGUGaCCGUGUUUccaGCGGCGu -3'
miRNA:   3'- -CCGUa-GcCCUAC-GGCGCGAG---CGCCGC- -5'
26262 3' -61.6 NC_005345.2 + 1908 0.66 0.401771
Target:  5'- gGGCGUagaUGuGGAUGUCGCcauGCUCGgaagGGCGg -3'
miRNA:   3'- -CCGUA---GC-CCUACGGCG---CGAGCg---CCGC- -5'
26262 3' -61.6 NC_005345.2 + 2998 0.67 0.351027
Target:  5'- cGGCGguaCGGGcgGCCGaggccaguaGCcggGCGGCGg -3'
miRNA:   3'- -CCGUa--GCCCuaCGGCg--------CGag-CGCCGC- -5'
26262 3' -61.6 NC_005345.2 + 3055 0.69 0.257337
Target:  5'- cGCcgCGuGGAUGuCCGCGCagGCcccGGCGg -3'
miRNA:   3'- cCGuaGC-CCUAC-GGCGCGagCG---CCGC- -5'
26262 3' -61.6 NC_005345.2 + 3163 0.7 0.205208
Target:  5'- cGGCgagcucGUCGGGGUGCCGgGU---CGGCGa -3'
miRNA:   3'- -CCG------UAGCCCUACGGCgCGagcGCCGC- -5'
26262 3' -61.6 NC_005345.2 + 3400 0.7 0.210515
Target:  5'- cGGCGaguUCGGGcugagagagGCgGCGggCGCGGCGg -3'
miRNA:   3'- -CCGU---AGCCCua-------CGgCGCgaGCGCCGC- -5'
26262 3' -61.6 NC_005345.2 + 3634 0.68 0.263754
Target:  5'- uGCAagCGGGcgaagaGUGUCGCGgaCGCGGCc -3'
miRNA:   3'- cCGUa-GCCC------UACGGCGCgaGCGCCGc -5'
26262 3' -61.6 NC_005345.2 + 4127 0.66 0.384344
Target:  5'- uGGCGUUc-GA-GCgGCuGCUCGCGGCGc -3'
miRNA:   3'- -CCGUAGccCUaCGgCG-CGAGCGCCGC- -5'
26262 3' -61.6 NC_005345.2 + 4174 0.72 0.154135
Target:  5'- cGGCAggcgcucaCGGGGcggcagGCCGUGCagGCGGCGc -3'
miRNA:   3'- -CCGUa-------GCCCUa-----CGGCGCGagCGCCGC- -5'
26262 3' -61.6 NC_005345.2 + 4251 0.69 0.257337
Target:  5'- uGCGgagCGGGAcgaggccacguUGCUGCGcCUCGCGacGCGg -3'
miRNA:   3'- cCGUa--GCCCU-----------ACGGCGC-GAGCGC--CGC- -5'
26262 3' -61.6 NC_005345.2 + 5081 0.71 0.17122
Target:  5'- aGGCgAUCGaGGAguuccGCCGCGagCGCGGCa -3'
miRNA:   3'- -CCG-UAGC-CCUa----CGGCGCgaGCGCCGc -5'
26262 3' -61.6 NC_005345.2 + 5142 0.7 0.200017
Target:  5'- cGGCgAUCaGGAggaaCGCGC-CGCGGCGg -3'
miRNA:   3'- -CCG-UAGcCCUacg-GCGCGaGCGCCGC- -5'
26262 3' -61.6 NC_005345.2 + 5220 0.67 0.34621
Target:  5'- cGGCgcuacacgccGUCGGGGUGCCcgcgguacacgguggGCGUgacggGCGGCa -3'
miRNA:   3'- -CCG----------UAGCCCUACGG---------------CGCGag---CGCCGc -5'
26262 3' -61.6 NC_005345.2 + 5604 0.76 0.078334
Target:  5'- uGCcgUGGGgcGCCGgGCUCGUGGCc -3'
miRNA:   3'- cCGuaGCCCuaCGGCgCGAGCGCCGc -5'
26262 3' -61.6 NC_005345.2 + 5641 0.68 0.305004
Target:  5'- aGCGcCGGGuucGCCGCGaccuUgGCGGCGa -3'
miRNA:   3'- cCGUaGCCCua-CGGCGCg---AgCGCCGC- -5'
26262 3' -61.6 NC_005345.2 + 6094 0.7 0.205208
Target:  5'- uGCA-CGGGGUaucgacgaGCCGCGCguaggUGCGGCc -3'
miRNA:   3'- cCGUaGCCCUA--------CGGCGCGa----GCGCCGc -5'
26262 3' -61.6 NC_005345.2 + 6359 0.69 0.232938
Target:  5'- cGGCGcCGGGuugGCCGCGgUgGCGuuGCGg -3'
miRNA:   3'- -CCGUaGCCCua-CGGCGCgAgCGC--CGC- -5'
26262 3' -61.6 NC_005345.2 + 8537 0.66 0.401771
Target:  5'- cGGC-UCGcGGAgagguacaccCCGUGCUCGcCGGCu -3'
miRNA:   3'- -CCGuAGC-CCUac--------GGCGCGAGC-GCCGc -5'
26262 3' -61.6 NC_005345.2 + 8761 0.77 0.062754
Target:  5'- aGCAUCGGGGagGCUGCGCaggaugagCGCGGUGa -3'
miRNA:   3'- cCGUAGCCCUa-CGGCGCGa-------GCGCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.