miRNA display CGI


Results 1 - 20 of 123 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26262 3' -61.6 NC_005345.2 + 44048 1.1 0.000184
Target:  5'- gGGCAUCGGGAUGCCGCGCUCGCGGCGg -3'
miRNA:   3'- -CCGUAGCCCUACGGCGCGAGCGCCGC- -5'
26262 3' -61.6 NC_005345.2 + 48562 0.83 0.024086
Target:  5'- gGGCGUCGcGGAUgcgggcGCCGaugaGCUCGCGGCGg -3'
miRNA:   3'- -CCGUAGC-CCUA------CGGCg---CGAGCGCCGC- -5'
26262 3' -61.6 NC_005345.2 + 44545 0.8 0.037888
Target:  5'- gGGCAaCGGGAacaggaccgcGCUGCGUUCGCGGCGa -3'
miRNA:   3'- -CCGUaGCCCUa---------CGGCGCGAGCGCCGC- -5'
26262 3' -61.6 NC_005345.2 + 37795 0.78 0.059188
Target:  5'- gGGCugcugccGUUGGcGGUGCCGCucacuGCUCGCGGCGc -3'
miRNA:   3'- -CCG-------UAGCC-CUACGGCG-----CGAGCGCCGC- -5'
26262 3' -61.6 NC_005345.2 + 8761 0.77 0.062754
Target:  5'- aGCAUCGGGGagGCUGCGCaggaugagCGCGGUGa -3'
miRNA:   3'- cCGUAGCCCUa-CGGCGCGa-------GCGCCGC- -5'
26262 3' -61.6 NC_005345.2 + 5604 0.76 0.078334
Target:  5'- uGCcgUGGGgcGCCGgGCUCGUGGCc -3'
miRNA:   3'- cCGuaGCCCuaCGGCgCGAGCGCCGc -5'
26262 3' -61.6 NC_005345.2 + 35486 0.76 0.080525
Target:  5'- cGGCGUCgaGGGcgGCgCGCuGCUCGuCGGCGc -3'
miRNA:   3'- -CCGUAG--CCCuaCG-GCG-CGAGC-GCCGC- -5'
26262 3' -61.6 NC_005345.2 + 13399 0.75 0.089886
Target:  5'- uGCccCGGGAUGCCGcCGCUCGUucggccgccgcgGGCGa -3'
miRNA:   3'- cCGuaGCCCUACGGC-GCGAGCG------------CCGC- -5'
26262 3' -61.6 NC_005345.2 + 39336 0.75 0.094946
Target:  5'- gGGCAUCGGcGGcaccgGCCGCGacacaGCGGCGa -3'
miRNA:   3'- -CCGUAGCC-CUa----CGGCGCgag--CGCCGC- -5'
26262 3' -61.6 NC_005345.2 + 31817 0.75 0.094946
Target:  5'- cGGgGUcCGGGAUGCgUGCGUgcaccCGCGGCGg -3'
miRNA:   3'- -CCgUA-GCCCUACG-GCGCGa----GCGCCGC- -5'
26262 3' -61.6 NC_005345.2 + 27142 0.74 0.103044
Target:  5'- cGGCGUCGaGcUGCCcgagGCGCUgCGCGGCGu -3'
miRNA:   3'- -CCGUAGCcCuACGG----CGCGA-GCGCCGC- -5'
26262 3' -61.6 NC_005345.2 + 34687 0.74 0.105885
Target:  5'- gGGCGUCGGGgAUGCCGaGCgaguCGGCGa -3'
miRNA:   3'- -CCGUAGCCC-UACGGCgCGagc-GCCGC- -5'
26262 3' -61.6 NC_005345.2 + 42939 0.74 0.114856
Target:  5'- aGGUAUCGGGAggugGCCaggGCGC-CGCGGa- -3'
miRNA:   3'- -CCGUAGCCCUa---CGG---CGCGaGCGCCgc -5'
26262 3' -61.6 NC_005345.2 + 27207 0.73 0.121225
Target:  5'- cGGCAgCGGGucgGCgcaGCGCUCGCaGGUGg -3'
miRNA:   3'- -CCGUaGCCCua-CGg--CGCGAGCG-CCGC- -5'
26262 3' -61.6 NC_005345.2 + 31460 0.73 0.124532
Target:  5'- aGGCGcCGGGGUGCgggugugaggCGgGCgagCGCGGCGu -3'
miRNA:   3'- -CCGUaGCCCUACG----------GCgCGa--GCGCCGC- -5'
26262 3' -61.6 NC_005345.2 + 35435 0.73 0.134599
Target:  5'- cGGCGUCGGGGUcccaugugaacucGCCGCaUUCGagGGCGa -3'
miRNA:   3'- -CCGUAGCCCUA-------------CGGCGcGAGCg-CCGC- -5'
26262 3' -61.6 NC_005345.2 + 37656 0.73 0.134959
Target:  5'- cGGCGUCGGuGcggGCCGC-CUgCGCGGCc -3'
miRNA:   3'- -CCGUAGCC-Cua-CGGCGcGA-GCGCCGc -5'
26262 3' -61.6 NC_005345.2 + 39418 0.73 0.13861
Target:  5'- aGCGUCGGcGcgGUCGCgGCccgCGCGGCGc -3'
miRNA:   3'- cCGUAGCC-CuaCGGCG-CGa--GCGCCGC- -5'
26262 3' -61.6 NC_005345.2 + 17489 0.73 0.13861
Target:  5'- cGGCGUCGGGAaggaacugcggGCCGcCGgUCGcCGGCc -3'
miRNA:   3'- -CCGUAGCCCUa----------CGGC-GCgAGC-GCCGc -5'
26262 3' -61.6 NC_005345.2 + 10679 0.73 0.140096
Target:  5'- cGGCG-CGGGAagUGcCCGCGCUgugcccggccuguccUGCGGCa -3'
miRNA:   3'- -CCGUaGCCCU--AC-GGCGCGA---------------GCGCCGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.