miRNA display CGI


Results 21 - 40 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26262 3' -61.6 NC_005345.2 + 38280 0.72 0.150112
Target:  5'- gGGCA-CGGGAcgcGCCGCGU--GCGGCa -3'
miRNA:   3'- -CCGUaGCCCUa--CGGCGCGagCGCCGc -5'
26262 3' -61.6 NC_005345.2 + 44839 0.72 0.154135
Target:  5'- cGCAUCGacGGGUGCUugaucuccgagGCGCccCGCGGCGg -3'
miRNA:   3'- cCGUAGC--CCUACGG-----------CGCGa-GCGCCGC- -5'
26262 3' -61.6 NC_005345.2 + 14898 0.72 0.154135
Target:  5'- aGGCGgagcagCGGGcgaagcggGCCGCGg-CGCGGCGg -3'
miRNA:   3'- -CCGUa-----GCCCua------CGGCGCgaGCGCCGC- -5'
26262 3' -61.6 NC_005345.2 + 4174 0.72 0.154135
Target:  5'- cGGCAggcgcucaCGGGGcggcagGCCGUGCagGCGGCGc -3'
miRNA:   3'- -CCGUa-------GCCCUa-----CGGCGCGagCGCCGC- -5'
26262 3' -61.6 NC_005345.2 + 38573 0.72 0.158256
Target:  5'- cGGCA-CGGcGuacGUgGCGCUCGCGGCc -3'
miRNA:   3'- -CCGUaGCC-Cua-CGgCGCGAGCGCCGc -5'
26262 3' -61.6 NC_005345.2 + 14899 0.71 0.17122
Target:  5'- gGGUcagGUCGaGGA--CCGCGUUCGCGGCc -3'
miRNA:   3'- -CCG---UAGC-CCUacGGCGCGAGCGCCGc -5'
26262 3' -61.6 NC_005345.2 + 5081 0.71 0.17122
Target:  5'- aGGCgAUCGaGGAguuccGCCGCGagCGCGGCa -3'
miRNA:   3'- -CCG-UAGC-CCUa----CGGCGCgaGCGCCGc -5'
26262 3' -61.6 NC_005345.2 + 16354 0.71 0.180383
Target:  5'- cGGCAUCGcg--GCCgGCGC-CGCGGUGa -3'
miRNA:   3'- -CCGUAGCccuaCGG-CGCGaGCGCCGC- -5'
26262 3' -61.6 NC_005345.2 + 26588 0.71 0.180383
Target:  5'- gGGC-UCGaaucGGUGCuCGCGCUCGCuGCGg -3'
miRNA:   3'- -CCGuAGCc---CUACG-GCGCGAGCGcCGC- -5'
26262 3' -61.6 NC_005345.2 + 18717 0.71 0.184646
Target:  5'- gGGUgugcccgGUCGGGAUGUgGCGCgccaugagCGCGGaCGc -3'
miRNA:   3'- -CCG-------UAGCCCUACGgCGCGa-------GCGCC-GC- -5'
26262 3' -61.6 NC_005345.2 + 33033 0.7 0.196957
Target:  5'- cGGCcgCGGGGUGCgGUccggcucgacguuggGCUCGUaGGUGg -3'
miRNA:   3'- -CCGuaGCCCUACGgCG---------------CGAGCG-CCGC- -5'
26262 3' -61.6 NC_005345.2 + 5142 0.7 0.200017
Target:  5'- cGGCgAUCaGGAggaaCGCGC-CGCGGCGg -3'
miRNA:   3'- -CCG-UAGcCCUacg-GCGCGaGCGCCGC- -5'
26262 3' -61.6 NC_005345.2 + 3163 0.7 0.205208
Target:  5'- cGGCgagcucGUCGGGGUGCCGgGU---CGGCGa -3'
miRNA:   3'- -CCG------UAGCCCUACGGCgCGagcGCCGC- -5'
26262 3' -61.6 NC_005345.2 + 6094 0.7 0.205208
Target:  5'- uGCA-CGGGGUaucgacgaGCCGCGCguaggUGCGGCc -3'
miRNA:   3'- cCGUaGCCCUA--------CGGCGCGa----GCGCCGc -5'
26262 3' -61.6 NC_005345.2 + 3400 0.7 0.210515
Target:  5'- cGGCGaguUCGGGcugagagagGCgGCGggCGCGGCGg -3'
miRNA:   3'- -CCGU---AGCCCua-------CGgCGCgaGCGCCGC- -5'
26262 3' -61.6 NC_005345.2 + 23710 0.7 0.210515
Target:  5'- cGGUA-CGGGGcuCUGCGCUCGCuuccuGGCGg -3'
miRNA:   3'- -CCGUaGCCCUacGGCGCGAGCG-----CCGC- -5'
26262 3' -61.6 NC_005345.2 + 33875 0.7 0.220925
Target:  5'- cGGCGUCgacguggGGGAcGCCGCuCgCGCGGCc -3'
miRNA:   3'- -CCGUAG-------CCCUaCGGCGcGaGCGCCGc -5'
26262 3' -61.6 NC_005345.2 + 14676 0.69 0.22715
Target:  5'- cGGCGUcgccgaugcCGGGccgGCCGUGCcCGUGGUGu -3'
miRNA:   3'- -CCGUA---------GCCCua-CGGCGCGaGCGCCGC- -5'
26262 3' -61.6 NC_005345.2 + 19258 0.69 0.22715
Target:  5'- cGCAggacCGGGAUGCCGacgGCggcCGCGuGCGu -3'
miRNA:   3'- cCGUa---GCCCUACGGCg--CGa--GCGC-CGC- -5'
26262 3' -61.6 NC_005345.2 + 23792 0.69 0.22715
Target:  5'- aGCAUgaGGGAgagcUGCCGaCGCUCG-GGCa -3'
miRNA:   3'- cCGUAg-CCCU----ACGGC-GCGAGCgCCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.