miRNA display CGI


Results 21 - 40 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26262 3' -61.6 NC_005345.2 + 36790 0.66 0.401771
Target:  5'- aGGCGUCGGGcc-CCGUGCagccgaUUGCGGa- -3'
miRNA:   3'- -CCGUAGCCCuacGGCGCG------AGCGCCgc -5'
26262 3' -61.6 NC_005345.2 + 1908 0.66 0.401771
Target:  5'- gGGCGUagaUGuGGAUGUCGCcauGCUCGgaagGGCGg -3'
miRNA:   3'- -CCGUA---GC-CCUACGGCG---CGAGCg---CCGC- -5'
26262 3' -61.6 NC_005345.2 + 27139 0.66 0.401771
Target:  5'- cGGCGggccCGGcAUGCCGC-CgUGCGGCa -3'
miRNA:   3'- -CCGUa---GCCcUACGGCGcGaGCGCCGc -5'
26262 3' -61.6 NC_005345.2 + 1615 0.66 0.401771
Target:  5'- cGCGuUCGGuGAUGagGuCGgUCGCGGCGa -3'
miRNA:   3'- cCGU-AGCC-CUACggC-GCgAGCGCCGC- -5'
26262 3' -61.6 NC_005345.2 + 19446 0.66 0.384344
Target:  5'- gGGC-UCGGGcaGCagcgcgauCGCGUUCGCcGGCGu -3'
miRNA:   3'- -CCGuAGCCCuaCG--------GCGCGAGCG-CCGC- -5'
26262 3' -61.6 NC_005345.2 + 22081 0.66 0.375821
Target:  5'- cGCGUCGGuGAucUGCCccaucuGCGCcugCGUGGCc -3'
miRNA:   3'- cCGUAGCC-CU--ACGG------CGCGa--GCGCCGc -5'
26262 3' -61.6 NC_005345.2 + 31752 0.66 0.375821
Target:  5'- uGCGggugCGGGGUGCgagUGCGuCUCGgGuGCGg -3'
miRNA:   3'- cCGUa---GCCCUACG---GCGC-GAGCgC-CGC- -5'
26262 3' -61.6 NC_005345.2 + 42659 0.66 0.359161
Target:  5'- cGGCGuccacgccUCGGGcucGCCGCcguacaGCUCGgCGGCc -3'
miRNA:   3'- -CCGU--------AGCCCua-CGGCG------CGAGC-GCCGc -5'
26262 3' -61.6 NC_005345.2 + 24196 0.66 0.359161
Target:  5'- cGGCcgcccGUCGGG--GCCGaGUucgagUCGCGGCGg -3'
miRNA:   3'- -CCG-----UAGCCCuaCGGCgCG-----AGCGCCGC- -5'
26262 3' -61.6 NC_005345.2 + 17956 0.66 0.384344
Target:  5'- cGGCGuccgcUCGGccgccUGCCGgGC-CGCGGCc -3'
miRNA:   3'- -CCGU-----AGCCcu---ACGGCgCGaGCGCCGc -5'
26262 3' -61.6 NC_005345.2 + 23759 0.67 0.343025
Target:  5'- aGCAagGGGGcgucaUGCCGUGg-CGCGGCc -3'
miRNA:   3'- cCGUagCCCU-----ACGGCGCgaGCGCCGc -5'
26262 3' -61.6 NC_005345.2 + 39882 0.67 0.319813
Target:  5'- cGGCcgacaugCGGGAcuugucgGCCGCaccguGgUCGCGGCGu -3'
miRNA:   3'- -CCGua-----GCCCUa------CGGCG-----CgAGCGCCGC- -5'
26262 3' -61.6 NC_005345.2 + 30004 0.67 0.335155
Target:  5'- cGGgGUCcGGGUGgCGCGCcaUGCGGCc -3'
miRNA:   3'- -CCgUAGcCCUACgGCGCGa-GCGCCGc -5'
26262 3' -61.6 NC_005345.2 + 15040 0.67 0.335155
Target:  5'- cGCGUCGGcggcGAUGUCGCcgUCGCgGGCGc -3'
miRNA:   3'- cCGUAGCC----CUACGGCGcgAGCG-CCGC- -5'
26262 3' -61.6 NC_005345.2 + 29960 0.67 0.335155
Target:  5'- gGGcCGUCGGGcucGUCGUcgagggGCUCGuCGGCGu -3'
miRNA:   3'- -CC-GUAGCCCua-CGGCG------CGAGC-GCCGC- -5'
26262 3' -61.6 NC_005345.2 + 20729 0.67 0.330496
Target:  5'- cGGCccUCGGcGAccgauccgcccugccUGCCGCuGCcgcCGCGGCGg -3'
miRNA:   3'- -CCGu-AGCC-CU---------------ACGGCG-CGa--GCGCCGC- -5'
26262 3' -61.6 NC_005345.2 + 38958 0.67 0.330496
Target:  5'- cGGCAU-GGGAUcacuuccucuuucgcGuuGCcuguuGCUUGCGGCGg -3'
miRNA:   3'- -CCGUAgCCCUA---------------CggCG-----CGAGCGCCGC- -5'
26262 3' -61.6 NC_005345.2 + 35093 0.67 0.327417
Target:  5'- aGGUucUCGGcGGUGgUGCGggCGUGGCGg -3'
miRNA:   3'- -CCGu-AGCC-CUACgGCGCgaGCGCCGC- -5'
26262 3' -61.6 NC_005345.2 + 31347 0.67 0.327417
Target:  5'- cGGCA--GGGAUGauCCG-GCUCGgGGUGa -3'
miRNA:   3'- -CCGUagCCCUAC--GGCgCGAGCgCCGC- -5'
26262 3' -61.6 NC_005345.2 + 19325 0.67 0.327417
Target:  5'- uGGCcgCGacGAUGCCGggcUGCUCGCcgggGGCGa -3'
miRNA:   3'- -CCGuaGCc-CUACGGC---GCGAGCG----CCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.