miRNA display CGI


Results 1 - 20 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26262 3' -61.6 NC_005345.2 + 48562 0.83 0.024086
Target:  5'- gGGCGUCGcGGAUgcgggcGCCGaugaGCUCGCGGCGg -3'
miRNA:   3'- -CCGUAGC-CCUA------CGGCg---CGAGCGCCGC- -5'
26262 3' -61.6 NC_005345.2 + 4251 0.69 0.257337
Target:  5'- uGCGgagCGGGAcgaggccacguUGCUGCGcCUCGCGacGCGg -3'
miRNA:   3'- cCGUa--GCCCU-----------ACGGCGC-GAGCGC--CGC- -5'
26262 3' -61.6 NC_005345.2 + 32823 0.68 0.270301
Target:  5'- aGGCAcUCGGGAagcaguggGCCGaGUUCGaGGCGa -3'
miRNA:   3'- -CCGU-AGCCCUa-------CGGCgCGAGCgCCGC- -5'
26262 3' -61.6 NC_005345.2 + 22769 0.66 0.401771
Target:  5'- gGGCAcucggucaccUCGGGAgggauCCGCGCgaucCuCGGCGg -3'
miRNA:   3'- -CCGU----------AGCCCUac---GGCGCGa---GcGCCGC- -5'
26262 3' -61.6 NC_005345.2 + 10679 0.73 0.140096
Target:  5'- cGGCG-CGGGAagUGcCCGCGCUgugcccggccuguccUGCGGCa -3'
miRNA:   3'- -CCGUaGCCCU--AC-GGCGCGA---------------GCGCCGc -5'
26262 3' -61.6 NC_005345.2 + 4174 0.72 0.154135
Target:  5'- cGGCAggcgcucaCGGGGcggcagGCCGUGCagGCGGCGc -3'
miRNA:   3'- -CCGUa-------GCCCUa-----CGGCGCGagCGCCGC- -5'
26262 3' -61.6 NC_005345.2 + 38573 0.72 0.158256
Target:  5'- cGGCA-CGGcGuacGUgGCGCUCGCGGCc -3'
miRNA:   3'- -CCGUaGCC-Cua-CGgCGCGAGCGCCGc -5'
26262 3' -61.6 NC_005345.2 + 5081 0.71 0.17122
Target:  5'- aGGCgAUCGaGGAguuccGCCGCGagCGCGGCa -3'
miRNA:   3'- -CCG-UAGC-CCUa----CGGCGCgaGCGCCGc -5'
26262 3' -61.6 NC_005345.2 + 23710 0.7 0.210515
Target:  5'- cGGUA-CGGGGcuCUGCGCUCGCuuccuGGCGg -3'
miRNA:   3'- -CCGUaGCCCUacGGCGCGAGCG-----CCGC- -5'
26262 3' -61.6 NC_005345.2 + 3055 0.69 0.257337
Target:  5'- cGCcgCGuGGAUGuCCGCGCagGCcccGGCGg -3'
miRNA:   3'- cCGuaGC-CCUAC-GGCGCGagCG---CCGC- -5'
26262 3' -61.6 NC_005345.2 + 23792 0.69 0.22715
Target:  5'- aGCAUgaGGGAgagcUGCCGaCGCUCG-GGCa -3'
miRNA:   3'- cCGUAg-CCCU----ACGGC-GCGAGCgCCGc -5'
26262 3' -61.6 NC_005345.2 + 26588 0.71 0.180383
Target:  5'- gGGC-UCGaaucGGUGCuCGCGCUCGCuGCGg -3'
miRNA:   3'- -CCGuAGCc---CUACG-GCGCGAGCGcCGC- -5'
26262 3' -61.6 NC_005345.2 + 44545 0.8 0.037888
Target:  5'- gGGCAaCGGGAacaggaccgcGCUGCGUUCGCGGCGa -3'
miRNA:   3'- -CCGUaGCCCUa---------CGGCGCGAGCGCCGC- -5'
26262 3' -61.6 NC_005345.2 + 14676 0.69 0.22715
Target:  5'- cGGCGUcgccgaugcCGGGccgGCCGUGCcCGUGGUGu -3'
miRNA:   3'- -CCGUA---------GCCCua-CGGCGCGaGCGCCGC- -5'
26262 3' -61.6 NC_005345.2 + 5604 0.76 0.078334
Target:  5'- uGCcgUGGGgcGCCGgGCUCGUGGCc -3'
miRNA:   3'- cCGuaGCCCuaCGGCgCGAGCGCCGc -5'
26262 3' -61.6 NC_005345.2 + 16354 0.71 0.180383
Target:  5'- cGGCAUCGcg--GCCgGCGC-CGCGGUGa -3'
miRNA:   3'- -CCGUAGCccuaCGG-CGCGaGCGCCGC- -5'
26262 3' -61.6 NC_005345.2 + 10776 0.69 0.232938
Target:  5'- cGGcCGUCGaGAcaGCCGCGCU-GCGGCa -3'
miRNA:   3'- -CC-GUAGCcCUa-CGGCGCGAgCGCCGc -5'
26262 3' -61.6 NC_005345.2 + 3634 0.68 0.263754
Target:  5'- uGCAagCGGGcgaagaGUGUCGCGgaCGCGGCc -3'
miRNA:   3'- cCGUa-GCCC------UACGGCGCgaGCGCCGc -5'
26262 3' -61.6 NC_005345.2 + 27142 0.74 0.103044
Target:  5'- cGGCGUCGaGcUGCCcgagGCGCUgCGCGGCGu -3'
miRNA:   3'- -CCGUAGCcCuACGG----CGCGA-GCGCCGC- -5'
26262 3' -61.6 NC_005345.2 + 14898 0.72 0.154135
Target:  5'- aGGCGgagcagCGGGcgaagcggGCCGCGg-CGCGGCGg -3'
miRNA:   3'- -CCGUa-----GCCCua------CGGCGCgaGCGCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.