miRNA display CGI


Results 1 - 20 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26262 3' -61.6 NC_005345.2 + 46074 0.67 0.343025
Target:  5'- aGGCGgcCGGGGccgccgggGCCuGCGCggacauccaCGCGGCGa -3'
miRNA:   3'- -CCGUa-GCCCUa-------CGG-CGCGa--------GCGCCGC- -5'
26262 3' -61.6 NC_005345.2 + 42659 0.66 0.359161
Target:  5'- cGGCGuccacgccUCGGGcucGCCGCcguacaGCUCGgCGGCc -3'
miRNA:   3'- -CCGU--------AGCCCua-CGGCG------CGAGC-GCCGc -5'
26262 3' -61.6 NC_005345.2 + 24196 0.66 0.359161
Target:  5'- cGGCcgcccGUCGGG--GCCGaGUucgagUCGCGGCGg -3'
miRNA:   3'- -CCG-----UAGCCCuaCGGCgCG-----AGCGCCGC- -5'
26262 3' -61.6 NC_005345.2 + 22294 0.66 0.359161
Target:  5'- cGCuGUCGGGcacguUGcCCGCGCUCgGCGcGCc -3'
miRNA:   3'- cCG-UAGCCCu----AC-GGCGCGAG-CGC-CGc -5'
26262 3' -61.6 NC_005345.2 + 28184 0.66 0.359161
Target:  5'- gGGC-UCGGGGUGUC-UGUUC-CGGCa -3'
miRNA:   3'- -CCGuAGCCCUACGGcGCGAGcGCCGc -5'
26262 3' -61.6 NC_005345.2 + 2998 0.67 0.351027
Target:  5'- cGGCGguaCGGGcgGCCGaggccaguaGCcggGCGGCGg -3'
miRNA:   3'- -CCGUa--GCCCuaCGGCg--------CGag-CGCCGC- -5'
26262 3' -61.6 NC_005345.2 + 43854 0.67 0.351027
Target:  5'- cGGuCGaCGGGGcgucgGCCGgGaCUcCGCGGCGg -3'
miRNA:   3'- -CC-GUaGCCCUa----CGGCgC-GA-GCGCCGC- -5'
26262 3' -61.6 NC_005345.2 + 38699 0.67 0.351027
Target:  5'- cGCAgaaucUCGGuGA-GCUGCGCaaCGCGGUGg -3'
miRNA:   3'- cCGU-----AGCC-CUaCGGCGCGa-GCGCCGC- -5'
26262 3' -61.6 NC_005345.2 + 5220 0.67 0.34621
Target:  5'- cGGCgcuacacgccGUCGGGGUGCCcgcgguacacgguggGCGUgacggGCGGCa -3'
miRNA:   3'- -CCG----------UAGCCCUACGG---------------CGCGag---CGCCGc -5'
26262 3' -61.6 NC_005345.2 + 31752 0.66 0.375821
Target:  5'- uGCGggugCGGGGUGCgagUGCGuCUCGgGuGCGg -3'
miRNA:   3'- cCGUa---GCCCUACG---GCGC-GAGCgC-CGC- -5'
26262 3' -61.6 NC_005345.2 + 22081 0.66 0.375821
Target:  5'- cGCGUCGGuGAucUGCCccaucuGCGCcugCGUGGCc -3'
miRNA:   3'- cCGUAGCC-CU--ACGG------CGCGa--GCGCCGc -5'
26262 3' -61.6 NC_005345.2 + 19446 0.66 0.384344
Target:  5'- gGGC-UCGGGcaGCagcgcgauCGCGUUCGCcGGCGu -3'
miRNA:   3'- -CCGuAGCCCuaCG--------GCGCGAGCG-CCGC- -5'
26262 3' -61.6 NC_005345.2 + 27139 0.66 0.401771
Target:  5'- cGGCGggccCGGcAUGCCGC-CgUGCGGCa -3'
miRNA:   3'- -CCGUa---GCCcUACGGCGcGaGCGCCGc -5'
26262 3' -61.6 NC_005345.2 + 1908 0.66 0.401771
Target:  5'- gGGCGUagaUGuGGAUGUCGCcauGCUCGgaagGGCGg -3'
miRNA:   3'- -CCGUA---GC-CCUACGGCG---CGAGCg---CCGC- -5'
26262 3' -61.6 NC_005345.2 + 36790 0.66 0.401771
Target:  5'- aGGCGUCGGGcc-CCGUGCagccgaUUGCGGa- -3'
miRNA:   3'- -CCGUAGCCCuacGGCGCG------AGCGCCgc -5'
26262 3' -61.6 NC_005345.2 + 35938 0.66 0.401771
Target:  5'- gGGCG-CGGGGUgugcucGCCGCGCggGCuGCc -3'
miRNA:   3'- -CCGUaGCCCUA------CGGCGCGagCGcCGc -5'
26262 3' -61.6 NC_005345.2 + 8537 0.66 0.401771
Target:  5'- cGGC-UCGcGGAgagguacaccCCGUGCUCGcCGGCu -3'
miRNA:   3'- -CCGuAGC-CCUac--------GGCGCGAGC-GCCGc -5'
26262 3' -61.6 NC_005345.2 + 36238 0.66 0.392995
Target:  5'- gGGCga-GGGAguagGCgGCcgUCGCGGCGa -3'
miRNA:   3'- -CCGuagCCCUa---CGgCGcgAGCGCCGC- -5'
26262 3' -61.6 NC_005345.2 + 29331 0.66 0.392124
Target:  5'- cGGCcgCcccGGGUGUCaGCGCUCGUcgccgucGGCGu -3'
miRNA:   3'- -CCGuaGc--CCUACGG-CGCGAGCG-------CCGC- -5'
26262 3' -61.6 NC_005345.2 + 17956 0.66 0.384344
Target:  5'- cGGCGuccgcUCGGccgccUGCCGgGC-CGCGGCc -3'
miRNA:   3'- -CCGU-----AGCCcu---ACGGCgCGaGCGCCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.