miRNA display CGI


Results 41 - 60 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26262 5' -58.5 NC_005345.2 + 41146 0.67 0.409788
Target:  5'- cUCGUgaaACCGCGGC-CGCCGGUUg -3'
miRNA:   3'- uAGCGgaaUGGCGUCGuGUGGCCGAg -5'
26262 5' -58.5 NC_005345.2 + 43994 0.67 0.408854
Target:  5'- cUCGUCggccGCCGCGGCGCguuccuccugaucGCCgGGUUCg -3'
miRNA:   3'- uAGCGGaa--UGGCGUCGUG-------------UGG-CCGAG- -5'
26262 5' -58.5 NC_005345.2 + 42789 0.67 0.408854
Target:  5'- -aCGCC--ACCGCGGCcaacccgGCGCC-GCUCg -3'
miRNA:   3'- uaGCGGaaUGGCGUCG-------UGUGGcCGAG- -5'
26262 5' -58.5 NC_005345.2 + 15054 0.67 0.400501
Target:  5'- uGUCGCCg--UCGCGG-GCGCCGGCc- -3'
miRNA:   3'- -UAGCGGaauGGCGUCgUGUGGCCGag -5'
26262 5' -58.5 NC_005345.2 + 47900 0.67 0.400501
Target:  5'- uGUgGUCgUGCCGCAGCcCGCCGGa-- -3'
miRNA:   3'- -UAgCGGaAUGGCGUCGuGUGGCCgag -5'
26262 5' -58.5 NC_005345.2 + 33029 0.67 0.400501
Target:  5'- --gGCUcgGCCGCGggguGCGguCCGGCUCg -3'
miRNA:   3'- uagCGGaaUGGCGU----CGUguGGCCGAG- -5'
26262 5' -58.5 NC_005345.2 + 11114 0.67 0.400501
Target:  5'- gGUCGCCg---CGCAGCuCACCgacgGGCUUg -3'
miRNA:   3'- -UAGCGGaaugGCGUCGuGUGG----CCGAG- -5'
26262 5' -58.5 NC_005345.2 + 26046 0.67 0.400501
Target:  5'- cUCGCC-UGCCGUGGgG-ACCGGaCUCa -3'
miRNA:   3'- uAGCGGaAUGGCGUCgUgUGGCC-GAG- -5'
26262 5' -58.5 NC_005345.2 + 21018 0.67 0.394993
Target:  5'- uUCGCCg-GCCcgggugcguuccucgGCAcGCGCGCCGGCg- -3'
miRNA:   3'- uAGCGGaaUGG---------------CGU-CGUGUGGCCGag -5'
26262 5' -58.5 NC_005345.2 + 15481 0.67 0.394993
Target:  5'- -aCGCCgUGCuCGguGCAgaugucggcgaucguCAUCGGCUCa -3'
miRNA:   3'- uaGCGGaAUG-GCguCGU---------------GUGGCCGAG- -5'
26262 5' -58.5 NC_005345.2 + 33658 0.67 0.391348
Target:  5'- -aCGCCcgACuUGCGGCGCAgcuCgGGCUCg -3'
miRNA:   3'- uaGCGGaaUG-GCGUCGUGU---GgCCGAG- -5'
26262 5' -58.5 NC_005345.2 + 45724 0.67 0.382333
Target:  5'- cAUCGCCgcccGCCGCcGCGCccGCCGcCUCu -3'
miRNA:   3'- -UAGCGGaa--UGGCGuCGUG--UGGCcGAG- -5'
26262 5' -58.5 NC_005345.2 + 43690 0.67 0.382333
Target:  5'- gAUCaGCCUcGCCGC-GUGgGCCGGcCUCg -3'
miRNA:   3'- -UAG-CGGAaUGGCGuCGUgUGGCC-GAG- -5'
26262 5' -58.5 NC_005345.2 + 29074 0.67 0.382333
Target:  5'- cUCGCCgagACCGCgAGC-UACC-GCUCg -3'
miRNA:   3'- uAGCGGaa-UGGCG-UCGuGUGGcCGAG- -5'
26262 5' -58.5 NC_005345.2 + 44241 0.67 0.382333
Target:  5'- -cCGCCUacgcaGCCGCAGCcguCAgCGGCg- -3'
miRNA:   3'- uaGCGGAa----UGGCGUCGu--GUgGCCGag -5'
26262 5' -58.5 NC_005345.2 + 22144 0.67 0.382333
Target:  5'- gGUCGCgcUACCGCgacgcuguggcgAGCAgCGCCGGCg- -3'
miRNA:   3'- -UAGCGgaAUGGCG------------UCGU-GUGGCCGag -5'
26262 5' -58.5 NC_005345.2 + 15394 0.67 0.382333
Target:  5'- uUgGCCcgggUGCUGCcuGCgacggGCACCGGCUCg -3'
miRNA:   3'- uAgCGGa---AUGGCGu-CG-----UGUGGCCGAG- -5'
26262 5' -58.5 NC_005345.2 + 46200 0.67 0.382333
Target:  5'- aGUUGCUgacGCCGUAGCGCGCCaugaGCUg -3'
miRNA:   3'- -UAGCGGaa-UGGCGUCGUGUGGc---CGAg -5'
26262 5' -58.5 NC_005345.2 + 44218 0.68 0.373457
Target:  5'- -cCGCCacccgGCCGgAGCGCACgugCGGCUg -3'
miRNA:   3'- uaGCGGaa---UGGCgUCGUGUG---GCCGAg -5'
26262 5' -58.5 NC_005345.2 + 45271 0.68 0.364723
Target:  5'- cUCGCCgcGCUGCAG-GCACuCGGCg- -3'
miRNA:   3'- uAGCGGaaUGGCGUCgUGUG-GCCGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.