miRNA display CGI


Results 21 - 40 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26262 5' -58.5 NC_005345.2 + 34730 0.66 0.448241
Target:  5'- uUCGCCguaUACCGCGGggugauccuCGCGgCGGCg- -3'
miRNA:   3'- uAGCGGa--AUGGCGUC---------GUGUgGCCGag -5'
26262 5' -58.5 NC_005345.2 + 34218 0.66 0.44824
Target:  5'- uUCGCCgccgcccGCUGCAGC-CGCCGcGC-Cg -3'
miRNA:   3'- uAGCGGaa-----UGGCGUCGuGUGGC-CGaG- -5'
26262 5' -58.5 NC_005345.2 + 28157 0.66 0.445287
Target:  5'- cGUCGCCcggucggcguuccucGCCGCGGC-CAaggggCGGCUCg -3'
miRNA:   3'- -UAGCGGaa-------------UGGCGUCGuGUg----GCCGAG- -5'
26262 5' -58.5 NC_005345.2 + 33453 0.66 0.438439
Target:  5'- uUCGCCgaggACCugcaGCGGCAgAUCGGC-Cg -3'
miRNA:   3'- uAGCGGaa--UGG----CGUCGUgUGGCCGaG- -5'
26262 5' -58.5 NC_005345.2 + 39936 0.66 0.438438
Target:  5'- cGUCGCCgggacuacgUACgCGUacGGCACcCCGGCgUCg -3'
miRNA:   3'- -UAGCGGa--------AUG-GCG--UCGUGuGGCCG-AG- -5'
26262 5' -58.5 NC_005345.2 + 21516 0.66 0.438438
Target:  5'- uGUCGgCggACCGCgAGCAgcggaccgaucuCGCCGuGCUCg -3'
miRNA:   3'- -UAGCgGaaUGGCG-UCGU------------GUGGC-CGAG- -5'
26262 5' -58.5 NC_005345.2 + 23998 0.67 0.428761
Target:  5'- aGUCGCCgu-UCGuCGGCGCgAUCGcGCUCg -3'
miRNA:   3'- -UAGCGGaauGGC-GUCGUG-UGGC-CGAG- -5'
26262 5' -58.5 NC_005345.2 + 12830 0.67 0.428761
Target:  5'- -nCGCCUgcGCCGCAu--CACCGGCg- -3'
miRNA:   3'- uaGCGGAa-UGGCGUcguGUGGCCGag -5'
26262 5' -58.5 NC_005345.2 + 33596 0.67 0.428761
Target:  5'- gGUCGCCggUGCCGCcguGUucucCGCCGcGUUCg -3'
miRNA:   3'- -UAGCGGa-AUGGCGu--CGu---GUGGC-CGAG- -5'
26262 5' -58.5 NC_005345.2 + 15905 0.67 0.42876
Target:  5'- -aUGCCggGCCGUgugaucgguucGGgGgGCCGGCUCu -3'
miRNA:   3'- uaGCGGaaUGGCG-----------UCgUgUGGCCGAG- -5'
26262 5' -58.5 NC_005345.2 + 47783 0.67 0.42876
Target:  5'- -cCGCCga--CGCGacuGCACCGGCUCg -3'
miRNA:   3'- uaGCGGaaugGCGUcg-UGUGGCCGAG- -5'
26262 5' -58.5 NC_005345.2 + 45512 0.67 0.41921
Target:  5'- -cCGCCggGCUGCggacGGCACACCugcGGCg- -3'
miRNA:   3'- uaGCGGaaUGGCG----UCGUGUGG---CCGag -5'
26262 5' -58.5 NC_005345.2 + 14644 0.67 0.41921
Target:  5'- -cCGCCUcgACCGC-GUccucgGCACCGGC-Cg -3'
miRNA:   3'- uaGCGGAa-UGGCGuCG-----UGUGGCCGaG- -5'
26262 5' -58.5 NC_005345.2 + 34348 0.67 0.419209
Target:  5'- -gCGCCc-GCCGCucgacgucgaAGCGCACCGGggCg -3'
miRNA:   3'- uaGCGGaaUGGCG----------UCGUGUGGCCgaG- -5'
26262 5' -58.5 NC_005345.2 + 27710 0.67 0.419209
Target:  5'- uUCGCauggUGuCCGCAGaCGCGgCCGGcCUCg -3'
miRNA:   3'- uAGCGga--AU-GGCGUC-GUGU-GGCC-GAG- -5'
26262 5' -58.5 NC_005345.2 + 47108 0.67 0.419209
Target:  5'- -cCGCCggGCCGCGcCGgGCCcGCUCg -3'
miRNA:   3'- uaGCGGaaUGGCGUcGUgUGGcCGAG- -5'
26262 5' -58.5 NC_005345.2 + 6349 0.67 0.409789
Target:  5'- --gGCCcaacuugGCCGCAucCGCACCGGCUa -3'
miRNA:   3'- uagCGGaa-----UGGCGUc-GUGUGGCCGAg -5'
26262 5' -58.5 NC_005345.2 + 29244 0.67 0.409789
Target:  5'- cAUCGC----CCGCGauGCGCAgCGGCUCg -3'
miRNA:   3'- -UAGCGgaauGGCGU--CGUGUgGCCGAG- -5'
26262 5' -58.5 NC_005345.2 + 5427 0.67 0.409789
Target:  5'- cUCGCCgaguucuuCgGCGGCGC-CCGGgUCg -3'
miRNA:   3'- uAGCGGaau-----GgCGUCGUGuGGCCgAG- -5'
26262 5' -58.5 NC_005345.2 + 23477 0.67 0.409789
Target:  5'- aGUCGCCgcagGCCGau-CACuuCGGCUCg -3'
miRNA:   3'- -UAGCGGaa--UGGCgucGUGugGCCGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.