miRNA display CGI


Results 21 - 40 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26262 5' -58.5 NC_005345.2 + 32786 0.66 0.458162
Target:  5'- cGUCGCgaUcACCGCGGC--GCCGGC-Cg -3'
miRNA:   3'- -UAGCGgaA-UGGCGUCGugUGGCCGaG- -5'
26262 5' -58.5 NC_005345.2 + 45659 0.66 0.458162
Target:  5'- cUCGCCUgcgacgACCggGCAGUGCAcCCGGaUCg -3'
miRNA:   3'- uAGCGGAa-----UGG--CGUCGUGU-GGCCgAG- -5'
26262 5' -58.5 NC_005345.2 + 34218 0.66 0.44824
Target:  5'- uUCGCCgccgcccGCUGCAGC-CGCCGcGC-Cg -3'
miRNA:   3'- uAGCGGaa-----UGGCGUCGuGUGGC-CGaG- -5'
26262 5' -58.5 NC_005345.2 + 39936 0.66 0.438438
Target:  5'- cGUCGCCgggacuacgUACgCGUacGGCACcCCGGCgUCg -3'
miRNA:   3'- -UAGCGGa--------AUG-GCG--UCGUGuGGCCG-AG- -5'
26262 5' -58.5 NC_005345.2 + 16078 0.66 0.478351
Target:  5'- cGUgGCagcUGCCGCAcguaCACGCCGaGCUCg -3'
miRNA:   3'- -UAgCGga-AUGGCGUc---GUGUGGC-CGAG- -5'
26262 5' -58.5 NC_005345.2 + 21516 0.66 0.438438
Target:  5'- uGUCGgCggACCGCgAGCAgcggaccgaucuCGCCGuGCUCg -3'
miRNA:   3'- -UAGCgGaaUGGCG-UCGU------------GUGGC-CGAG- -5'
26262 5' -58.5 NC_005345.2 + 15481 0.67 0.394993
Target:  5'- -aCGCCgUGCuCGguGCAgaugucggcgaucguCAUCGGCUCa -3'
miRNA:   3'- uaGCGGaAUG-GCguCGU---------------GUGGCCGAG- -5'
26262 5' -58.5 NC_005345.2 + 26046 0.67 0.400501
Target:  5'- cUCGCC-UGCCGUGGgG-ACCGGaCUCa -3'
miRNA:   3'- uAGCGGaAUGGCGUCgUgUGGCC-GAG- -5'
26262 5' -58.5 NC_005345.2 + 15054 0.67 0.400501
Target:  5'- uGUCGCCg--UCGCGG-GCGCCGGCc- -3'
miRNA:   3'- -UAGCGGaauGGCGUCgUGUGGCCGag -5'
26262 5' -58.5 NC_005345.2 + 11114 0.67 0.400501
Target:  5'- gGUCGCCg---CGCAGCuCACCgacgGGCUUg -3'
miRNA:   3'- -UAGCGGaaugGCGUCGuGUGG----CCGAG- -5'
26262 5' -58.5 NC_005345.2 + 29244 0.67 0.409789
Target:  5'- cAUCGC----CCGCGauGCGCAgCGGCUCg -3'
miRNA:   3'- -UAGCGgaauGGCGU--CGUGUgGCCGAG- -5'
26262 5' -58.5 NC_005345.2 + 47783 0.67 0.42876
Target:  5'- -cCGCCga--CGCGacuGCACCGGCUCg -3'
miRNA:   3'- uaGCGGaaugGCGUcg-UGUGGCCGAG- -5'
26262 5' -58.5 NC_005345.2 + 33029 0.67 0.400501
Target:  5'- --gGCUcgGCCGCGggguGCGguCCGGCUCg -3'
miRNA:   3'- uagCGGaaUGGCGU----CGUguGGCCGAG- -5'
26262 5' -58.5 NC_005345.2 + 21018 0.67 0.394993
Target:  5'- uUCGCCg-GCCcgggugcguuccucgGCAcGCGCGCCGGCg- -3'
miRNA:   3'- uAGCGGaaUGG---------------CGU-CGUGUGGCCGag -5'
26262 5' -58.5 NC_005345.2 + 46200 0.67 0.382333
Target:  5'- aGUUGCUgacGCCGUAGCGCGCCaugaGCUg -3'
miRNA:   3'- -UAGCGGaa-UGGCGUCGUGUGGc---CGAg -5'
26262 5' -58.5 NC_005345.2 + 43994 0.67 0.408854
Target:  5'- cUCGUCggccGCCGCGGCGCguuccuccugaucGCCgGGUUCg -3'
miRNA:   3'- uAGCGGaa--UGGCGUCGUG-------------UGG-CCGAG- -5'
26262 5' -58.5 NC_005345.2 + 42789 0.67 0.408854
Target:  5'- -aCGCC--ACCGCGGCcaacccgGCGCC-GCUCg -3'
miRNA:   3'- uaGCGGaaUGGCGUCG-------UGUGGcCGAG- -5'
26262 5' -58.5 NC_005345.2 + 5427 0.67 0.409789
Target:  5'- cUCGCCgaguucuuCgGCGGCGC-CCGGgUCg -3'
miRNA:   3'- uAGCGGaau-----GgCGUCGUGuGGCCgAG- -5'
26262 5' -58.5 NC_005345.2 + 6349 0.67 0.409789
Target:  5'- --gGCCcaacuugGCCGCAucCGCACCGGCUa -3'
miRNA:   3'- uagCGGaa-----UGGCGUc-GUGUGGCCGAg -5'
26262 5' -58.5 NC_005345.2 + 23477 0.67 0.409789
Target:  5'- aGUCGCCgcagGCCGau-CACuuCGGCUCg -3'
miRNA:   3'- -UAGCGGaa--UGGCgucGUGugGCCGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.