miRNA display CGI


Results 21 - 40 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26262 5' -58.5 NC_005345.2 + 15532 0.7 0.243934
Target:  5'- gAUCGCCUggacgaaCGCGGCggagaacacggcgGCACCGGCg- -3'
miRNA:   3'- -UAGCGGAaug----GCGUCG-------------UGUGGCCGag -5'
26262 5' -58.5 NC_005345.2 + 15787 0.7 0.251008
Target:  5'- -cCGCCcu-CCcguccgguguggGCGGCACGCCGGCUa -3'
miRNA:   3'- uaGCGGaauGG------------CGUCGUGUGGCCGAg -5'
26262 5' -58.5 NC_005345.2 + 9666 0.7 0.257586
Target:  5'- --gGCUgacgUACCGCgAGCGcCGCCGGCUg -3'
miRNA:   3'- uagCGGa---AUGGCG-UCGU-GUGGCCGAg -5'
26262 5' -58.5 NC_005345.2 + 26603 0.7 0.264303
Target:  5'- cUCGCgCUcGCUGCGGCGCagGCCGGUg- -3'
miRNA:   3'- uAGCG-GAaUGGCGUCGUG--UGGCCGag -5'
26262 5' -58.5 NC_005345.2 + 43032 0.7 0.264303
Target:  5'- cGUCGUCggcgGCCGCAcCuACGCgCGGCUCg -3'
miRNA:   3'- -UAGCGGaa--UGGCGUcG-UGUG-GCCGAG- -5'
26262 5' -58.5 NC_005345.2 + 3945 0.7 0.277456
Target:  5'- cUCGCCgcgGCCggcagccucucggGCGGCAUACuCGGCUg -3'
miRNA:   3'- uAGCGGaa-UGG-------------CGUCGUGUG-GCCGAg -5'
26262 5' -58.5 NC_005345.2 + 17893 0.69 0.285307
Target:  5'- aGUCGCCgaucACgGCGccGCGCACaCGGUUCg -3'
miRNA:   3'- -UAGCGGaa--UGgCGU--CGUGUG-GCCGAG- -5'
26262 5' -58.5 NC_005345.2 + 24573 0.69 0.285307
Target:  5'- uGUCGCCguacgcgUACCGCAG---GCCGGCg- -3'
miRNA:   3'- -UAGCGGa------AUGGCGUCgugUGGCCGag -5'
26262 5' -58.5 NC_005345.2 + 43039 0.69 0.291861
Target:  5'- -gCGCCgua-CGguGCACucgcgguGCCGGCUCg -3'
miRNA:   3'- uaGCGGaaugGCguCGUG-------UGGCCGAG- -5'
26262 5' -58.5 NC_005345.2 + 41841 0.69 0.292596
Target:  5'- -aCGCCgucgcACCGCGGCucgucCugCGGUUCg -3'
miRNA:   3'- uaGCGGaa---UGGCGUCGu----GugGCCGAG- -5'
26262 5' -58.5 NC_005345.2 + 18443 0.69 0.292596
Target:  5'- cUCGCCgaucACCGCGGCcACccgcaGCCGGC-Cg -3'
miRNA:   3'- uAGCGGaa--UGGCGUCG-UG-----UGGCCGaG- -5'
26262 5' -58.5 NC_005345.2 + 14916 0.69 0.300029
Target:  5'- --aGCgg-GCCGCGGCGCGgCGGCUg -3'
miRNA:   3'- uagCGgaaUGGCGUCGUGUgGCCGAg -5'
26262 5' -58.5 NC_005345.2 + 15919 0.69 0.300029
Target:  5'- gAUCGCCUUcgccgugaacACCGCcuGCgACACCGuGCUg -3'
miRNA:   3'- -UAGCGGAA----------UGGCGu-CG-UGUGGC-CGAg -5'
26262 5' -58.5 NC_005345.2 + 9742 0.69 0.307607
Target:  5'- gGUCgGCCUcgaUGCUGCGGUuccccugcaggACACCGGCg- -3'
miRNA:   3'- -UAG-CGGA---AUGGCGUCG-----------UGUGGCCGag -5'
26262 5' -58.5 NC_005345.2 + 27123 0.69 0.307608
Target:  5'- -gCGCC--ACgGCGGCACcgGCCGGCgUCg -3'
miRNA:   3'- uaGCGGaaUGgCGUCGUG--UGGCCG-AG- -5'
26262 5' -58.5 NC_005345.2 + 9402 0.69 0.307608
Target:  5'- --aGCC-UGCCGCAgGCGCagcgggACCGGCUg -3'
miRNA:   3'- uagCGGaAUGGCGU-CGUG------UGGCCGAg -5'
26262 5' -58.5 NC_005345.2 + 44650 0.69 0.315331
Target:  5'- cUCGaCC-UGCUGCGGUGgGCaCGGCUCg -3'
miRNA:   3'- uAGC-GGaAUGGCGUCGUgUG-GCCGAG- -5'
26262 5' -58.5 NC_005345.2 + 7718 0.69 0.315331
Target:  5'- -cCGCCgguacgagcUGCCGCugcuGCAgGaCCGGCUCg -3'
miRNA:   3'- uaGCGGa--------AUGGCGu---CGUgU-GGCCGAG- -5'
26262 5' -58.5 NC_005345.2 + 5188 0.69 0.315331
Target:  5'- -cCGCCggGCUGCA-CGCAUCGGCa- -3'
miRNA:   3'- uaGCGGaaUGGCGUcGUGUGGCCGag -5'
26262 5' -58.5 NC_005345.2 + 16359 0.69 0.323201
Target:  5'- -gCGCCgagcaucGCCGCGGCGuCGCC-GCUCu -3'
miRNA:   3'- uaGCGGaa-----UGGCGUCGU-GUGGcCGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.