miRNA display CGI


Results 21 - 40 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26262 5' -58.5 NC_005345.2 + 11114 0.67 0.400501
Target:  5'- gGUCGCCg---CGCAGCuCACCgacgGGCUUg -3'
miRNA:   3'- -UAGCGGaaugGCGUCGuGUGG----CCGAG- -5'
26262 5' -58.5 NC_005345.2 + 11433 0.71 0.220181
Target:  5'- -gCGCCgcGCCGCAGCGCgaucccgcaggACUGGCg- -3'
miRNA:   3'- uaGCGGaaUGGCGUCGUG-----------UGGCCGag -5'
26262 5' -58.5 NC_005345.2 + 12499 0.66 0.458163
Target:  5'- cUCGCCgaguggUCGCAGUACGCgGGUg- -3'
miRNA:   3'- uAGCGGaau---GGCGUCGUGUGgCCGag -5'
26262 5' -58.5 NC_005345.2 + 12752 0.71 0.226077
Target:  5'- gAUCGCCacccgGCCGCGGCAgACgUGGCg- -3'
miRNA:   3'- -UAGCGGaa---UGGCGUCGUgUG-GCCGag -5'
26262 5' -58.5 NC_005345.2 + 12770 0.68 0.331215
Target:  5'- -aCGCCgcgGCCGCggAGCGCGCCcGCg- -3'
miRNA:   3'- uaGCGGaa-UGGCG--UCGUGUGGcCGag -5'
26262 5' -58.5 NC_005345.2 + 12804 0.71 0.232106
Target:  5'- -cCGCCcgaGCCGCucGGCcCGCCGGUUCg -3'
miRNA:   3'- uaGCGGaa-UGGCG--UCGuGUGGCCGAG- -5'
26262 5' -58.5 NC_005345.2 + 12830 0.67 0.428761
Target:  5'- -nCGCCUgcGCCGCAu--CACCGGCg- -3'
miRNA:   3'- uaGCGGAa-UGGCGUcguGUGGCCGag -5'
26262 5' -58.5 NC_005345.2 + 12957 0.68 0.339376
Target:  5'- uUUGCaggGCCuGCAGgACACCGGCg- -3'
miRNA:   3'- uAGCGgaaUGG-CGUCgUGUGGCCGag -5'
26262 5' -58.5 NC_005345.2 + 13278 0.66 0.468201
Target:  5'- -cCGCUgcACCgGCAGCuCGCCGGUg- -3'
miRNA:   3'- uaGCGGaaUGG-CGUCGuGUGGCCGag -5'
26262 5' -58.5 NC_005345.2 + 14145 0.74 0.138592
Target:  5'- cGUgGCC--GCCGCAGCGCcCCGGCg- -3'
miRNA:   3'- -UAgCGGaaUGGCGUCGUGuGGCCGag -5'
26262 5' -58.5 NC_005345.2 + 14529 0.79 0.05706
Target:  5'- -cCGCCccgACCGCcGCACGCUGGCUCc -3'
miRNA:   3'- uaGCGGaa-UGGCGuCGUGUGGCCGAG- -5'
26262 5' -58.5 NC_005345.2 + 14644 0.67 0.41921
Target:  5'- -cCGCCUcgACCGC-GUccucgGCACCGGC-Cg -3'
miRNA:   3'- uaGCGGAa-UGGCGuCG-----UGUGGCCGaG- -5'
26262 5' -58.5 NC_005345.2 + 14711 0.69 0.323201
Target:  5'- cGUCGCCgugUugUGCAGCGCGucgcccauCCGGUcCg -3'
miRNA:   3'- -UAGCGGa--AugGCGUCGUGU--------GGCCGaG- -5'
26262 5' -58.5 NC_005345.2 + 14916 0.69 0.300029
Target:  5'- --aGCgg-GCCGCGGCGCGgCGGCUg -3'
miRNA:   3'- uagCGgaaUGGCGUCGUGUgGCCGAg -5'
26262 5' -58.5 NC_005345.2 + 15054 0.67 0.400501
Target:  5'- uGUCGCCg--UCGCGG-GCGCCGGCc- -3'
miRNA:   3'- -UAGCGGaauGGCGUCgUGUGGCCGag -5'
26262 5' -58.5 NC_005345.2 + 15394 0.67 0.382333
Target:  5'- uUgGCCcgggUGCUGCcuGCgacggGCACCGGCUCg -3'
miRNA:   3'- uAgCGGa---AUGGCGu-CG-----UGUGGCCGAG- -5'
26262 5' -58.5 NC_005345.2 + 15481 0.67 0.394993
Target:  5'- -aCGCCgUGCuCGguGCAgaugucggcgaucguCAUCGGCUCa -3'
miRNA:   3'- uaGCGGaAUG-GCguCGU---------------GUGGCCGAG- -5'
26262 5' -58.5 NC_005345.2 + 15532 0.7 0.243934
Target:  5'- gAUCGCCUggacgaaCGCGGCggagaacacggcgGCACCGGCg- -3'
miRNA:   3'- -UAGCGGAaug----GCGUCG-------------UGUGGCCGag -5'
26262 5' -58.5 NC_005345.2 + 15616 0.68 0.331215
Target:  5'- cGUCGUCagcaUGCCGCGGCuCGCCGccugcccggacuGCUCg -3'
miRNA:   3'- -UAGCGGa---AUGGCGUCGuGUGGC------------CGAG- -5'
26262 5' -58.5 NC_005345.2 + 15787 0.7 0.251008
Target:  5'- -cCGCCcu-CCcguccgguguggGCGGCACGCCGGCUa -3'
miRNA:   3'- uaGCGGaauGG------------CGUCGUGUGGCCGAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.