miRNA display CGI


Results 1 - 20 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26262 5' -58.5 NC_005345.2 + 569 0.68 0.347681
Target:  5'- cUCGCCc-GCCGCgAGCuCAUCGGCg- -3'
miRNA:   3'- uAGCGGaaUGGCG-UCGuGUGGCCGag -5'
26262 5' -58.5 NC_005345.2 + 3821 0.72 0.177606
Target:  5'- --gGCCgcGCaGCAGCuCGCCGGCUCg -3'
miRNA:   3'- uagCGGaaUGgCGUCGuGUGGCCGAG- -5'
26262 5' -58.5 NC_005345.2 + 3945 0.7 0.277456
Target:  5'- cUCGCCgcgGCCggcagccucucggGCGGCAUACuCGGCUg -3'
miRNA:   3'- uAGCGGaa-UGG-------------CGUCGUGUG-GCCGAg -5'
26262 5' -58.5 NC_005345.2 + 4702 0.69 0.323201
Target:  5'- gAUCGC---GCCGCAGUACACCcGCa- -3'
miRNA:   3'- -UAGCGgaaUGGCGUCGUGUGGcCGag -5'
26262 5' -58.5 NC_005345.2 + 5188 0.69 0.315331
Target:  5'- -cCGCCggGCUGCA-CGCAUCGGCa- -3'
miRNA:   3'- uaGCGGaaUGGCGUcGUGUGGCCGag -5'
26262 5' -58.5 NC_005345.2 + 5427 0.67 0.409789
Target:  5'- cUCGCCgaguucuuCgGCGGCGC-CCGGgUCg -3'
miRNA:   3'- uAGCGGaau-----GgCGUCGUGuGGCCgAG- -5'
26262 5' -58.5 NC_005345.2 + 5594 0.74 0.142505
Target:  5'- uUCGCgCUcgUGCCGUGGgGCGCCgGGCUCg -3'
miRNA:   3'- uAGCG-GA--AUGGCGUCgUGUGG-CCGAG- -5'
26262 5' -58.5 NC_005345.2 + 6134 0.68 0.364723
Target:  5'- uGUUGaaCCUgcggACC-CGGuCGCACCGGCUCa -3'
miRNA:   3'- -UAGC--GGAa---UGGcGUC-GUGUGGCCGAG- -5'
26262 5' -58.5 NC_005345.2 + 6349 0.67 0.409789
Target:  5'- --gGCCcaacuugGCCGCAucCGCACCGGCUa -3'
miRNA:   3'- uagCGGaa-----UGGCGUc-GUGUGGCCGAg -5'
26262 5' -58.5 NC_005345.2 + 6873 0.66 0.458163
Target:  5'- aGUCGCCgaUGCCGCuGCGCAUgUGGaUCg -3'
miRNA:   3'- -UAGCGGa-AUGGCGuCGUGUG-GCCgAG- -5'
26262 5' -58.5 NC_005345.2 + 7718 0.69 0.315331
Target:  5'- -cCGCCgguacgagcUGCCGCugcuGCAgGaCCGGCUCg -3'
miRNA:   3'- uaGCGGa--------AUGGCGu---CGUgU-GGCCGAG- -5'
26262 5' -58.5 NC_005345.2 + 8525 0.72 0.203277
Target:  5'- cUCGCCaUGCCGCGGCucgcggagagguACACCccguGCUCg -3'
miRNA:   3'- uAGCGGaAUGGCGUCG------------UGUGGc---CGAG- -5'
26262 5' -58.5 NC_005345.2 + 8531 0.68 0.364723
Target:  5'- -cCGCCUcgACCGUucgGGCACGCC-GCUg -3'
miRNA:   3'- uaGCGGAa-UGGCG---UCGUGUGGcCGAg -5'
26262 5' -58.5 NC_005345.2 + 8943 0.68 0.364722
Target:  5'- -cCGUCUcgacguagcUGCCGagcuGCACGCCGGcCUCg -3'
miRNA:   3'- uaGCGGA---------AUGGCgu--CGUGUGGCC-GAG- -5'
26262 5' -58.5 NC_005345.2 + 9402 0.69 0.307608
Target:  5'- --aGCC-UGCCGCAgGCGCagcgggACCGGCUg -3'
miRNA:   3'- uagCGGaAUGGCGU-CGUG------UGGCCGAg -5'
26262 5' -58.5 NC_005345.2 + 9607 0.68 0.339376
Target:  5'- --gGCCgcgggGCCGguGCACgACCuGCUCg -3'
miRNA:   3'- uagCGGaa---UGGCguCGUG-UGGcCGAG- -5'
26262 5' -58.5 NC_005345.2 + 9666 0.7 0.257586
Target:  5'- --gGCUgacgUACCGCgAGCGcCGCCGGCUg -3'
miRNA:   3'- uagCGGa---AUGGCG-UCGU-GUGGCCGAg -5'
26262 5' -58.5 NC_005345.2 + 9742 0.69 0.307607
Target:  5'- gGUCgGCCUcgaUGCUGCGGUuccccugcaggACACCGGCg- -3'
miRNA:   3'- -UAG-CGGA---AUGGCGUCG-----------UGUGGCCGag -5'
26262 5' -58.5 NC_005345.2 + 10093 0.68 0.347681
Target:  5'- gAUCGCCgccugCGUAGCGCccaccgGCCGGUUCc -3'
miRNA:   3'- -UAGCGGaaug-GCGUCGUG------UGGCCGAG- -5'
26262 5' -58.5 NC_005345.2 + 10789 0.72 0.197898
Target:  5'- --aGCCgcGCUGCGGCAggcggACCGGCUCg -3'
miRNA:   3'- uagCGGaaUGGCGUCGUg----UGGCCGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.