miRNA display CGI


Results 1 - 20 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26262 5' -58.5 NC_005345.2 + 14529 0.79 0.05706
Target:  5'- -cCGCCccgACCGCcGCACGCUGGCUCc -3'
miRNA:   3'- uaGCGGaa-UGGCGuCGUGUGGCCGAG- -5'
26262 5' -58.5 NC_005345.2 + 27123 0.69 0.307608
Target:  5'- -gCGCC--ACgGCGGCACcgGCCGGCgUCg -3'
miRNA:   3'- uaGCGGaaUGgCGUCGUG--UGGCCG-AG- -5'
26262 5' -58.5 NC_005345.2 + 7718 0.69 0.315331
Target:  5'- -cCGCCgguacgagcUGCCGCugcuGCAgGaCCGGCUCg -3'
miRNA:   3'- uaGCGGa--------AUGGCGu---CGUgU-GGCCGAG- -5'
26262 5' -58.5 NC_005345.2 + 30829 0.66 0.478351
Target:  5'- cGUCGCggcgugGCUGCAGCagaACACUGGC-Cg -3'
miRNA:   3'- -UAGCGgaa---UGGCGUCG---UGUGGCCGaG- -5'
26262 5' -58.5 NC_005345.2 + 10789 0.72 0.197898
Target:  5'- --aGCCgcGCUGCGGCAggcggACCGGCUCg -3'
miRNA:   3'- uagCGGaaUGGCGUCGUg----UGGCCGAG- -5'
26262 5' -58.5 NC_005345.2 + 25354 0.72 0.197898
Target:  5'- uGUCGCC--GCCGUccuggcguGGCAgUGCCGGCUCg -3'
miRNA:   3'- -UAGCGGaaUGGCG--------UCGU-GUGGCCGAG- -5'
26262 5' -58.5 NC_005345.2 + 30253 0.71 0.220181
Target:  5'- gAUCGCg--GCCGCcgAGCAgGCCgGGCUCg -3'
miRNA:   3'- -UAGCGgaaUGGCG--UCGUgUGG-CCGAG- -5'
26262 5' -58.5 NC_005345.2 + 12752 0.71 0.226077
Target:  5'- gAUCGCCacccgGCCGCGGCAgACgUGGCg- -3'
miRNA:   3'- -UAGCGGaa---UGGCGUCGUgUG-GCCGag -5'
26262 5' -58.5 NC_005345.2 + 26603 0.7 0.264303
Target:  5'- cUCGCgCUcGCUGCGGCGCagGCCGGUg- -3'
miRNA:   3'- uAGCG-GAaUGGCGUCGUG--UGGCCGag -5'
26262 5' -58.5 NC_005345.2 + 9402 0.69 0.307608
Target:  5'- --aGCC-UGCCGCAgGCGCagcgggACCGGCUg -3'
miRNA:   3'- uagCGGaAUGGCGU-CGUG------UGGCCGAg -5'
26262 5' -58.5 NC_005345.2 + 41841 0.69 0.292596
Target:  5'- -aCGCCgucgcACCGCGGCucgucCugCGGUUCg -3'
miRNA:   3'- uaGCGGaa---UGGCGUCGu----GugGCCGAG- -5'
26262 5' -58.5 NC_005345.2 + 9666 0.7 0.257586
Target:  5'- --gGCUgacgUACCGCgAGCGcCGCCGGCUg -3'
miRNA:   3'- uagCGGa---AUGGCG-UCGU-GUGGCCGAg -5'
26262 5' -58.5 NC_005345.2 + 14145 0.74 0.138592
Target:  5'- cGUgGCC--GCCGCAGCGCcCCGGCg- -3'
miRNA:   3'- -UAgCGGaaUGGCGUCGUGuGGCCGag -5'
26262 5' -58.5 NC_005345.2 + 14916 0.69 0.300029
Target:  5'- --aGCgg-GCCGCGGCGCGgCGGCUg -3'
miRNA:   3'- uagCGgaaUGGCGUCGUGUgGCCGAg -5'
26262 5' -58.5 NC_005345.2 + 5594 0.74 0.142505
Target:  5'- uUCGCgCUcgUGCCGUGGgGCGCCgGGCUCg -3'
miRNA:   3'- uAGCG-GA--AUGGCGUCgUGUGG-CCGAG- -5'
26262 5' -58.5 NC_005345.2 + 12804 0.71 0.232106
Target:  5'- -cCGCCcgaGCCGCucGGCcCGCCGGUUCg -3'
miRNA:   3'- uaGCGGaa-UGGCG--UCGuGUGGCCGAG- -5'
26262 5' -58.5 NC_005345.2 + 15919 0.69 0.300029
Target:  5'- gAUCGCCUUcgccgugaacACCGCcuGCgACACCGuGCUg -3'
miRNA:   3'- -UAGCGGAA----------UGGCGu-CG-UGUGGC-CGAg -5'
26262 5' -58.5 NC_005345.2 + 44650 0.69 0.315331
Target:  5'- cUCGaCC-UGCUGCGGUGgGCaCGGCUCg -3'
miRNA:   3'- uAGC-GGaAUGGCGUCGUgUG-GCCGAG- -5'
26262 5' -58.5 NC_005345.2 + 41107 0.74 0.142505
Target:  5'- -aCGCgg-GCCGCAGCACGCCcgcgguacggGGCUCc -3'
miRNA:   3'- uaGCGgaaUGGCGUCGUGUGG----------CCGAG- -5'
26262 5' -58.5 NC_005345.2 + 11433 0.71 0.220181
Target:  5'- -gCGCCgcGCCGCAGCGCgaucccgcaggACUGGCg- -3'
miRNA:   3'- uaGCGGaaUGGCGUCGUG-----------UGGCCGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.