miRNA display CGI


Results 1 - 20 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26262 5' -58.5 NC_005345.2 + 15054 0.67 0.400501
Target:  5'- uGUCGCCg--UCGCGG-GCGCCGGCc- -3'
miRNA:   3'- -UAGCGGaauGGCGUCgUGUGGCCGag -5'
26262 5' -58.5 NC_005345.2 + 21516 0.66 0.438438
Target:  5'- uGUCGgCggACCGCgAGCAgcggaccgaucuCGCCGuGCUCg -3'
miRNA:   3'- -UAGCgGaaUGGCG-UCGU------------GUGGC-CGAG- -5'
26262 5' -58.5 NC_005345.2 + 15905 0.67 0.42876
Target:  5'- -aUGCCggGCCGUgugaucgguucGGgGgGCCGGCUCu -3'
miRNA:   3'- uaGCGGaaUGGCG-----------UCgUgUGGCCGAG- -5'
26262 5' -58.5 NC_005345.2 + 47783 0.67 0.42876
Target:  5'- -cCGCCga--CGCGacuGCACCGGCUCg -3'
miRNA:   3'- uaGCGGaaugGCGUcg-UGUGGCCGAG- -5'
26262 5' -58.5 NC_005345.2 + 47108 0.67 0.419209
Target:  5'- -cCGCCggGCCGCGcCGgGCCcGCUCg -3'
miRNA:   3'- uaGCGGaaUGGCGUcGUgUGGcCGAG- -5'
26262 5' -58.5 NC_005345.2 + 34348 0.67 0.419209
Target:  5'- -gCGCCc-GCCGCucgacgucgaAGCGCACCGGggCg -3'
miRNA:   3'- uaGCGGaaUGGCG----------UCGUGUGGCCgaG- -5'
26262 5' -58.5 NC_005345.2 + 27710 0.67 0.419209
Target:  5'- uUCGCauggUGuCCGCAGaCGCGgCCGGcCUCg -3'
miRNA:   3'- uAGCGga--AU-GGCGUC-GUGU-GGCC-GAG- -5'
26262 5' -58.5 NC_005345.2 + 41146 0.67 0.409788
Target:  5'- cUCGUgaaACCGCGGC-CGCCGGUUg -3'
miRNA:   3'- uAGCGgaaUGGCGUCGuGUGGCCGAg -5'
26262 5' -58.5 NC_005345.2 + 33029 0.67 0.400501
Target:  5'- --gGCUcgGCCGCGggguGCGguCCGGCUCg -3'
miRNA:   3'- uagCGGaaUGGCGU----CGUguGGCCGAG- -5'
26262 5' -58.5 NC_005345.2 + 39936 0.66 0.438438
Target:  5'- cGUCGCCgggacuacgUACgCGUacGGCACcCCGGCgUCg -3'
miRNA:   3'- -UAGCGGa--------AUG-GCG--UCGUGuGGCCG-AG- -5'
26262 5' -58.5 NC_005345.2 + 34218 0.66 0.44824
Target:  5'- uUCGCCgccgcccGCUGCAGC-CGCCGcGC-Cg -3'
miRNA:   3'- uAGCGGaa-----UGGCGUCGuGUGGC-CGaG- -5'
26262 5' -58.5 NC_005345.2 + 45659 0.66 0.458162
Target:  5'- cUCGCCUgcgacgACCggGCAGUGCAcCCGGaUCg -3'
miRNA:   3'- uAGCGGAa-----UGG--CGUCGUGU-GGCCgAG- -5'
26262 5' -58.5 NC_005345.2 + 16078 0.66 0.478351
Target:  5'- cGUgGCagcUGCCGCAcguaCACGCCGaGCUCg -3'
miRNA:   3'- -UAgCGga-AUGGCGUc---GUGUGGC-CGAG- -5'
26262 5' -58.5 NC_005345.2 + 36319 0.66 0.478351
Target:  5'- cUCGCCggugaUGCGGCGCaggcgaACCGGCg- -3'
miRNA:   3'- uAGCGGaaug-GCGUCGUG------UGGCCGag -5'
26262 5' -58.5 NC_005345.2 + 33795 0.66 0.468201
Target:  5'- cGUCGCCgccuacuUCGCcGCACACCcGCUa -3'
miRNA:   3'- -UAGCGGaau----GGCGuCGUGUGGcCGAg -5'
26262 5' -58.5 NC_005345.2 + 44989 0.66 0.468201
Target:  5'- -gCGCC-UGCCGCGuCgACACCcGCUCg -3'
miRNA:   3'- uaGCGGaAUGGCGUcG-UGUGGcCGAG- -5'
26262 5' -58.5 NC_005345.2 + 13278 0.66 0.468201
Target:  5'- -cCGCUgcACCgGCAGCuCGCCGGUg- -3'
miRNA:   3'- uaGCGGaaUGG-CGUCGuGUGGCCGag -5'
26262 5' -58.5 NC_005345.2 + 32786 0.66 0.458162
Target:  5'- cGUCGCgaUcACCGCGGC--GCCGGC-Cg -3'
miRNA:   3'- -UAGCGgaA-UGGCGUCGugUGGCCGaG- -5'
26262 5' -58.5 NC_005345.2 + 32450 0.66 0.458162
Target:  5'- -gUGCCUgucgGCCGUgaugucGGCGaGCCGGCUg -3'
miRNA:   3'- uaGCGGAa---UGGCG------UCGUgUGGCCGAg -5'
26262 5' -58.5 NC_005345.2 + 23629 0.66 0.458162
Target:  5'- -cUGCCgcuuaCGCAGC-CGCCGGC-Cg -3'
miRNA:   3'- uaGCGGaaug-GCGUCGuGUGGCCGaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.