Results 1 - 20 of 123 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26262 | 5' | -58.5 | NC_005345.2 | + | 28541 | 0.66 | 0.478351 |
Target: 5'- cGUCGCCgagACuUGCgAGCGCccGCCGGCc- -3' miRNA: 3'- -UAGCGGaa-UG-GCG-UCGUG--UGGCCGag -5' |
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26262 | 5' | -58.5 | NC_005345.2 | + | 21516 | 0.66 | 0.438438 |
Target: 5'- uGUCGgCggACCGCgAGCAgcggaccgaucuCGCCGuGCUCg -3' miRNA: 3'- -UAGCgGaaUGGCG-UCGU------------GUGGC-CGAG- -5' |
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26262 | 5' | -58.5 | NC_005345.2 | + | 33453 | 0.66 | 0.438439 |
Target: 5'- uUCGCCgaggACCugcaGCGGCAgAUCGGC-Cg -3' miRNA: 3'- uAGCGGaa--UGG----CGUCGUgUGGCCGaG- -5' |
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26262 | 5' | -58.5 | NC_005345.2 | + | 30829 | 0.66 | 0.478351 |
Target: 5'- cGUCGCggcgugGCUGCAGCagaACACUGGC-Cg -3' miRNA: 3'- -UAGCGgaa---UGGCGUCG---UGUGGCCGaG- -5' |
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26262 | 5' | -58.5 | NC_005345.2 | + | 28157 | 0.66 | 0.445287 |
Target: 5'- cGUCGCCcggucggcguuccucGCCGCGGC-CAaggggCGGCUCg -3' miRNA: 3'- -UAGCGGaa-------------UGGCGUCGuGUg----GCCGAG- -5' |
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26262 | 5' | -58.5 | NC_005345.2 | + | 18974 | 0.66 | 0.448241 |
Target: 5'- cUCGCCgcaugggUCGCcGCugGCCGGCg- -3' miRNA: 3'- uAGCGGaau----GGCGuCGugUGGCCGag -5' |
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26262 | 5' | -58.5 | NC_005345.2 | + | 34730 | 0.66 | 0.448241 |
Target: 5'- uUCGCCguaUACCGCGGggugauccuCGCGgCGGCg- -3' miRNA: 3'- uAGCGGa--AUGGCGUC---------GUGUgGCCGag -5' |
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26262 | 5' | -58.5 | NC_005345.2 | + | 48579 | 0.66 | 0.448241 |
Target: 5'- -gCGCCgaugaGCuCGCGGCgggcgaggacccACGCCGGCUg -3' miRNA: 3'- uaGCGGaa---UG-GCGUCG------------UGUGGCCGAg -5' |
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26262 | 5' | -58.5 | NC_005345.2 | + | 43812 | 0.66 | 0.456169 |
Target: 5'- -gCGCCcacggcaccgcACUGCAGCGCuucGCCGGCgUCa -3' miRNA: 3'- uaGCGGaa---------UGGCGUCGUG---UGGCCG-AG- -5' |
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26262 | 5' | -58.5 | NC_005345.2 | + | 39936 | 0.66 | 0.438438 |
Target: 5'- cGUCGCCgggacuacgUACgCGUacGGCACcCCGGCgUCg -3' miRNA: 3'- -UAGCGGa--------AUG-GCG--UCGUGuGGCCG-AG- -5' |
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26262 | 5' | -58.5 | NC_005345.2 | + | 34218 | 0.66 | 0.44824 |
Target: 5'- uUCGCCgccgcccGCUGCAGC-CGCCGcGC-Cg -3' miRNA: 3'- uAGCGGaa-----UGGCGUCGuGUGGC-CGaG- -5' |
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26262 | 5' | -58.5 | NC_005345.2 | + | 45659 | 0.66 | 0.458162 |
Target: 5'- cUCGCCUgcgacgACCggGCAGUGCAcCCGGaUCg -3' miRNA: 3'- uAGCGGAa-----UGG--CGUCGUGU-GGCCgAG- -5' |
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26262 | 5' | -58.5 | NC_005345.2 | + | 16078 | 0.66 | 0.478351 |
Target: 5'- cGUgGCagcUGCCGCAcguaCACGCCGaGCUCg -3' miRNA: 3'- -UAgCGga-AUGGCGUc---GUGUGGC-CGAG- -5' |
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26262 | 5' | -58.5 | NC_005345.2 | + | 36319 | 0.66 | 0.478351 |
Target: 5'- cUCGCCggugaUGCGGCGCaggcgaACCGGCg- -3' miRNA: 3'- uAGCGGaaug-GCGUCGUG------UGGCCGag -5' |
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26262 | 5' | -58.5 | NC_005345.2 | + | 33795 | 0.66 | 0.468201 |
Target: 5'- cGUCGCCgccuacuUCGCcGCACACCcGCUa -3' miRNA: 3'- -UAGCGGaau----GGCGuCGUGUGGcCGAg -5' |
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26262 | 5' | -58.5 | NC_005345.2 | + | 44989 | 0.66 | 0.468201 |
Target: 5'- -gCGCC-UGCCGCGuCgACACCcGCUCg -3' miRNA: 3'- uaGCGGaAUGGCGUcG-UGUGGcCGAG- -5' |
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26262 | 5' | -58.5 | NC_005345.2 | + | 13278 | 0.66 | 0.468201 |
Target: 5'- -cCGCUgcACCgGCAGCuCGCCGGUg- -3' miRNA: 3'- uaGCGGaaUGG-CGUCGuGUGGCCGag -5' |
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26262 | 5' | -58.5 | NC_005345.2 | + | 32786 | 0.66 | 0.458162 |
Target: 5'- cGUCGCgaUcACCGCGGC--GCCGGC-Cg -3' miRNA: 3'- -UAGCGgaA-UGGCGUCGugUGGCCGaG- -5' |
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26262 | 5' | -58.5 | NC_005345.2 | + | 32450 | 0.66 | 0.458162 |
Target: 5'- -gUGCCUgucgGCCGUgaugucGGCGaGCCGGCUg -3' miRNA: 3'- uaGCGGAa---UGGCG------UCGUgUGGCCGAg -5' |
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26262 | 5' | -58.5 | NC_005345.2 | + | 23629 | 0.66 | 0.458162 |
Target: 5'- -cUGCCgcuuaCGCAGC-CGCCGGC-Cg -3' miRNA: 3'- uaGCGGaaug-GCGUCGuGUGGCCGaG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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