miRNA display CGI


Results 1 - 20 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26262 5' -58.5 NC_005345.2 + 44084 1.08 0.000388
Target:  5'- gAUCGCCUUACCGCAGCACACCGGCUCg -3'
miRNA:   3'- -UAGCGGAAUGGCGUCGUGUGGCCGAG- -5'
26262 5' -58.5 NC_005345.2 + 38308 0.82 0.037837
Target:  5'- -cCGCCc-ACCGCAGCucgGCGCCGGCUCg -3'
miRNA:   3'- uaGCGGaaUGGCGUCG---UGUGGCCGAG- -5'
26262 5' -58.5 NC_005345.2 + 14529 0.79 0.05706
Target:  5'- -cCGCCccgACCGCcGCACGCUGGCUCc -3'
miRNA:   3'- uaGCGGaa-UGGCGuCGUGUGGCCGAG- -5'
26262 5' -58.5 NC_005345.2 + 44907 0.76 0.098783
Target:  5'- cUCGCCcgcuCCGCAGCGgcgacCAUCGGCUCg -3'
miRNA:   3'- uAGCGGaau-GGCGUCGU-----GUGGCCGAG- -5'
26262 5' -58.5 NC_005345.2 + 38365 0.76 0.107281
Target:  5'- -cCGCC-UGCCGCAGCGCggcugucucgacgGCCGGCa- -3'
miRNA:   3'- uaGCGGaAUGGCGUCGUG-------------UGGCCGag -5'
26262 5' -58.5 NC_005345.2 + 42184 0.75 0.127082
Target:  5'- -gCGCC-UGCCGCAGCGaagcgauCGCCGGCa- -3'
miRNA:   3'- uaGCGGaAUGGCGUCGU-------GUGGCCGag -5'
26262 5' -58.5 NC_005345.2 + 14145 0.74 0.138592
Target:  5'- cGUgGCC--GCCGCAGCGCcCCGGCg- -3'
miRNA:   3'- -UAgCGGaaUGGCGUCGUGuGGCCGag -5'
26262 5' -58.5 NC_005345.2 + 5594 0.74 0.142505
Target:  5'- uUCGCgCUcgUGCCGUGGgGCGCCgGGCUCg -3'
miRNA:   3'- uAGCG-GA--AUGGCGUCgUGUGG-CCGAG- -5'
26262 5' -58.5 NC_005345.2 + 41107 0.74 0.142505
Target:  5'- -aCGCgg-GCCGCAGCACGCCcgcgguacggGGCUCc -3'
miRNA:   3'- uaGCGgaaUGGCGUCGUGUGG----------CCGAG- -5'
26262 5' -58.5 NC_005345.2 + 3821 0.72 0.177606
Target:  5'- --gGCCgcGCaGCAGCuCGCCGGCUCg -3'
miRNA:   3'- uagCGGaaUGgCGUCGuGUGGCCGAG- -5'
26262 5' -58.5 NC_005345.2 + 10789 0.72 0.197898
Target:  5'- --aGCCgcGCUGCGGCAggcggACCGGCUCg -3'
miRNA:   3'- uagCGGaaUGGCGUCGUg----UGGCCGAG- -5'
26262 5' -58.5 NC_005345.2 + 25354 0.72 0.197898
Target:  5'- uGUCGCC--GCCGUccuggcguGGCAgUGCCGGCUCg -3'
miRNA:   3'- -UAGCGGaaUGGCG--------UCGU-GUGGCCGAG- -5'
26262 5' -58.5 NC_005345.2 + 8525 0.72 0.203277
Target:  5'- cUCGCCaUGCCGCGGCucgcggagagguACACCccguGCUCg -3'
miRNA:   3'- uAGCGGaAUGGCGUCG------------UGUGGc---CGAG- -5'
26262 5' -58.5 NC_005345.2 + 43903 0.71 0.208783
Target:  5'- cAUCGCCacgcgGCgCGCAGCGCGUCGGCg- -3'
miRNA:   3'- -UAGCGGaa---UG-GCGUCGUGUGGCCGag -5'
26262 5' -58.5 NC_005345.2 + 30253 0.71 0.220181
Target:  5'- gAUCGCg--GCCGCcgAGCAgGCCgGGCUCg -3'
miRNA:   3'- -UAGCGgaaUGGCG--UCGUgUGG-CCGAG- -5'
26262 5' -58.5 NC_005345.2 + 11433 0.71 0.220181
Target:  5'- -gCGCCgcGCCGCAGCGCgaucccgcaggACUGGCg- -3'
miRNA:   3'- uaGCGGaaUGGCGUCGUG-----------UGGCCGag -5'
26262 5' -58.5 NC_005345.2 + 12752 0.71 0.226077
Target:  5'- gAUCGCCacccgGCCGCGGCAgACgUGGCg- -3'
miRNA:   3'- -UAGCGGaa---UGGCGUCGUgUG-GCCGag -5'
26262 5' -58.5 NC_005345.2 + 12804 0.71 0.232106
Target:  5'- -cCGCCcgaGCCGCucGGCcCGCCGGUUCg -3'
miRNA:   3'- uaGCGGaa-UGGCG--UCGuGUGGCCGAG- -5'
26262 5' -58.5 NC_005345.2 + 37720 0.71 0.23827
Target:  5'- gAUCGC---GCUGCGGCgcgGCGCCGGCUg -3'
miRNA:   3'- -UAGCGgaaUGGCGUCG---UGUGGCCGAg -5'
26262 5' -58.5 NC_005345.2 + 31308 0.71 0.240774
Target:  5'- uGUCGCCgggGCCcgGCggccgggcgggaaggGGCACGCCGGCa- -3'
miRNA:   3'- -UAGCGGaa-UGG--CG---------------UCGUGUGGCCGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.