Results 1 - 20 of 123 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26262 | 5' | -58.5 | NC_005345.2 | + | 44084 | 1.08 | 0.000388 |
Target: 5'- gAUCGCCUUACCGCAGCACACCGGCUCg -3' miRNA: 3'- -UAGCGGAAUGGCGUCGUGUGGCCGAG- -5' |
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26262 | 5' | -58.5 | NC_005345.2 | + | 38308 | 0.82 | 0.037837 |
Target: 5'- -cCGCCc-ACCGCAGCucgGCGCCGGCUCg -3' miRNA: 3'- uaGCGGaaUGGCGUCG---UGUGGCCGAG- -5' |
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26262 | 5' | -58.5 | NC_005345.2 | + | 14529 | 0.79 | 0.05706 |
Target: 5'- -cCGCCccgACCGCcGCACGCUGGCUCc -3' miRNA: 3'- uaGCGGaa-UGGCGuCGUGUGGCCGAG- -5' |
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26262 | 5' | -58.5 | NC_005345.2 | + | 38365 | 0.76 | 0.107281 |
Target: 5'- -cCGCC-UGCCGCAGCGCggcugucucgacgGCCGGCa- -3' miRNA: 3'- uaGCGGaAUGGCGUCGUG-------------UGGCCGag -5' |
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26262 | 5' | -58.5 | NC_005345.2 | + | 44907 | 0.76 | 0.098783 |
Target: 5'- cUCGCCcgcuCCGCAGCGgcgacCAUCGGCUCg -3' miRNA: 3'- uAGCGGaau-GGCGUCGU-----GUGGCCGAG- -5' |
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26262 | 5' | -58.5 | NC_005345.2 | + | 42184 | 0.75 | 0.127082 |
Target: 5'- -gCGCC-UGCCGCAGCGaagcgauCGCCGGCa- -3' miRNA: 3'- uaGCGGaAUGGCGUCGU-------GUGGCCGag -5' |
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26262 | 5' | -58.5 | NC_005345.2 | + | 14145 | 0.74 | 0.138592 |
Target: 5'- cGUgGCC--GCCGCAGCGCcCCGGCg- -3' miRNA: 3'- -UAgCGGaaUGGCGUCGUGuGGCCGag -5' |
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26262 | 5' | -58.5 | NC_005345.2 | + | 5594 | 0.74 | 0.142505 |
Target: 5'- uUCGCgCUcgUGCCGUGGgGCGCCgGGCUCg -3' miRNA: 3'- uAGCG-GA--AUGGCGUCgUGUGG-CCGAG- -5' |
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26262 | 5' | -58.5 | NC_005345.2 | + | 41107 | 0.74 | 0.142505 |
Target: 5'- -aCGCgg-GCCGCAGCACGCCcgcgguacggGGCUCc -3' miRNA: 3'- uaGCGgaaUGGCGUCGUGUGG----------CCGAG- -5' |
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26262 | 5' | -58.5 | NC_005345.2 | + | 25354 | 0.72 | 0.197898 |
Target: 5'- uGUCGCC--GCCGUccuggcguGGCAgUGCCGGCUCg -3' miRNA: 3'- -UAGCGGaaUGGCG--------UCGU-GUGGCCGAG- -5' |
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26262 | 5' | -58.5 | NC_005345.2 | + | 8525 | 0.72 | 0.203277 |
Target: 5'- cUCGCCaUGCCGCGGCucgcggagagguACACCccguGCUCg -3' miRNA: 3'- uAGCGGaAUGGCGUCG------------UGUGGc---CGAG- -5' |
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26262 | 5' | -58.5 | NC_005345.2 | + | 3821 | 0.72 | 0.177606 |
Target: 5'- --gGCCgcGCaGCAGCuCGCCGGCUCg -3' miRNA: 3'- uagCGGaaUGgCGUCGuGUGGCCGAG- -5' |
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26262 | 5' | -58.5 | NC_005345.2 | + | 10789 | 0.72 | 0.197898 |
Target: 5'- --aGCCgcGCUGCGGCAggcggACCGGCUCg -3' miRNA: 3'- uagCGGaaUGGCGUCGUg----UGGCCGAG- -5' |
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26262 | 5' | -58.5 | NC_005345.2 | + | 12804 | 0.71 | 0.232106 |
Target: 5'- -cCGCCcgaGCCGCucGGCcCGCCGGUUCg -3' miRNA: 3'- uaGCGGaa-UGGCG--UCGuGUGGCCGAG- -5' |
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26262 | 5' | -58.5 | NC_005345.2 | + | 37720 | 0.71 | 0.23827 |
Target: 5'- gAUCGC---GCUGCGGCgcgGCGCCGGCUg -3' miRNA: 3'- -UAGCGgaaUGGCGUCG---UGUGGCCGAg -5' |
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26262 | 5' | -58.5 | NC_005345.2 | + | 30253 | 0.71 | 0.220181 |
Target: 5'- gAUCGCg--GCCGCcgAGCAgGCCgGGCUCg -3' miRNA: 3'- -UAGCGgaaUGGCG--UCGUgUGG-CCGAG- -5' |
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26262 | 5' | -58.5 | NC_005345.2 | + | 31308 | 0.71 | 0.240774 |
Target: 5'- uGUCGCCgggGCCcgGCggccgggcgggaaggGGCACGCCGGCa- -3' miRNA: 3'- -UAGCGGaa-UGG--CG---------------UCGUGUGGCCGag -5' |
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26262 | 5' | -58.5 | NC_005345.2 | + | 12752 | 0.71 | 0.226077 |
Target: 5'- gAUCGCCacccgGCCGCGGCAgACgUGGCg- -3' miRNA: 3'- -UAGCGGaa---UGGCGUCGUgUG-GCCGag -5' |
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26262 | 5' | -58.5 | NC_005345.2 | + | 11433 | 0.71 | 0.220181 |
Target: 5'- -gCGCCgcGCCGCAGCGCgaucccgcaggACUGGCg- -3' miRNA: 3'- uaGCGGaaUGGCGUCGUG-----------UGGCCGag -5' |
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26262 | 5' | -58.5 | NC_005345.2 | + | 43903 | 0.71 | 0.208783 |
Target: 5'- cAUCGCCacgcgGCgCGCAGCGCGUCGGCg- -3' miRNA: 3'- -UAGCGGaa---UG-GCGUCGUGUGGCCGag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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