miRNA display CGI


Results 1 - 20 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26262 5' -58.5 NC_005345.2 + 48579 0.66 0.448241
Target:  5'- -gCGCCgaugaGCuCGCGGCgggcgaggacccACGCCGGCUg -3'
miRNA:   3'- uaGCGGaa---UG-GCGUCG------------UGUGGCCGAg -5'
26262 5' -58.5 NC_005345.2 + 47900 0.67 0.400501
Target:  5'- uGUgGUCgUGCCGCAGCcCGCCGGa-- -3'
miRNA:   3'- -UAgCGGaAUGGCGUCGuGUGGCCgag -5'
26262 5' -58.5 NC_005345.2 + 47783 0.67 0.42876
Target:  5'- -cCGCCga--CGCGacuGCACCGGCUCg -3'
miRNA:   3'- uaGCGGaaugGCGUcg-UGUGGCCGAG- -5'
26262 5' -58.5 NC_005345.2 + 47108 0.67 0.419209
Target:  5'- -cCGCCggGCCGCGcCGgGCCcGCUCg -3'
miRNA:   3'- uaGCGGaaUGGCGUcGUgUGGcCGAG- -5'
26262 5' -58.5 NC_005345.2 + 46200 0.67 0.382333
Target:  5'- aGUUGCUgacGCCGUAGCGCGCCaugaGCUg -3'
miRNA:   3'- -UAGCGGaa-UGGCGUCGUGUGGc---CGAg -5'
26262 5' -58.5 NC_005345.2 + 45767 0.68 0.364723
Target:  5'- cUCGCC--GCCGUGGCACACguaucGCUCu -3'
miRNA:   3'- uAGCGGaaUGGCGUCGUGUGgc---CGAG- -5'
26262 5' -58.5 NC_005345.2 + 45724 0.67 0.382333
Target:  5'- cAUCGCCgcccGCCGCcGCGCccGCCGcCUCu -3'
miRNA:   3'- -UAGCGGaa--UGGCGuCGUG--UGGCcGAG- -5'
26262 5' -58.5 NC_005345.2 + 45659 0.66 0.458162
Target:  5'- cUCGCCUgcgacgACCggGCAGUGCAcCCGGaUCg -3'
miRNA:   3'- uAGCGGAa-----UGG--CGUCGUGU-GGCCgAG- -5'
26262 5' -58.5 NC_005345.2 + 45512 0.67 0.41921
Target:  5'- -cCGCCggGCUGCggacGGCACACCugcGGCg- -3'
miRNA:   3'- uaGCGGaaUGGCG----UCGUGUGG---CCGag -5'
26262 5' -58.5 NC_005345.2 + 45271 0.68 0.364723
Target:  5'- cUCGCCgcGCUGCAG-GCACuCGGCg- -3'
miRNA:   3'- uAGCGGaaUGGCGUCgUGUG-GCCGag -5'
26262 5' -58.5 NC_005345.2 + 44989 0.66 0.468201
Target:  5'- -gCGCC-UGCCGCGuCgACACCcGCUCg -3'
miRNA:   3'- uaGCGGaAUGGCGUcG-UGUGGcCGAG- -5'
26262 5' -58.5 NC_005345.2 + 44907 0.76 0.098783
Target:  5'- cUCGCCcgcuCCGCAGCGgcgacCAUCGGCUCg -3'
miRNA:   3'- uAGCGGaau-GGCGUCGU-----GUGGCCGAG- -5'
26262 5' -58.5 NC_005345.2 + 44650 0.69 0.315331
Target:  5'- cUCGaCC-UGCUGCGGUGgGCaCGGCUCg -3'
miRNA:   3'- uAGC-GGaAUGGCGUCGUgUG-GCCGAG- -5'
26262 5' -58.5 NC_005345.2 + 44607 0.66 0.468201
Target:  5'- cAUCGaggaGCgGCGGCAgCGCCGGCUa -3'
miRNA:   3'- -UAGCggaaUGgCGUCGU-GUGGCCGAg -5'
26262 5' -58.5 NC_005345.2 + 44241 0.67 0.382333
Target:  5'- -cCGCCUacgcaGCCGCAGCcguCAgCGGCg- -3'
miRNA:   3'- uaGCGGAa----UGGCGUCGu--GUgGCCGag -5'
26262 5' -58.5 NC_005345.2 + 44218 0.68 0.373457
Target:  5'- -cCGCCacccgGCCGgAGCGCACgugCGGCUg -3'
miRNA:   3'- uaGCGGaa---UGGCgUCGUGUG---GCCGAg -5'
26262 5' -58.5 NC_005345.2 + 44084 1.08 0.000388
Target:  5'- gAUCGCCUUACCGCAGCACACCGGCUCg -3'
miRNA:   3'- -UAGCGGAAUGGCGUCGUGUGGCCGAG- -5'
26262 5' -58.5 NC_005345.2 + 43994 0.67 0.408854
Target:  5'- cUCGUCggccGCCGCGGCGCguuccuccugaucGCCgGGUUCg -3'
miRNA:   3'- uAGCGGaa--UGGCGUCGUG-------------UGG-CCGAG- -5'
26262 5' -58.5 NC_005345.2 + 43903 0.71 0.208783
Target:  5'- cAUCGCCacgcgGCgCGCAGCGCGUCGGCg- -3'
miRNA:   3'- -UAGCGGaa---UG-GCGUCGUGUGGCCGag -5'
26262 5' -58.5 NC_005345.2 + 43812 0.66 0.456169
Target:  5'- -gCGCCcacggcaccgcACUGCAGCGCuucGCCGGCgUCa -3'
miRNA:   3'- uaGCGGaa---------UGGCGUCGUG---UGGCCG-AG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.