miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26263 3' -59.5 NC_005345.2 + 48701 0.67 0.428937
Target:  5'- gGGCGGguaugcgccacggaCCCGCcCGuacUACGUCCGCc -3'
miRNA:   3'- -CCGCC--------------GGGCGaGCuacAUGCAGGCGc -5'
26263 3' -59.5 NC_005345.2 + 47950 0.69 0.343427
Target:  5'- cGUGGCCCGCgggccggacugcCGAgccgcccgUGUGCG-CCGCGc -3'
miRNA:   3'- cCGCCGGGCGa-----------GCU--------ACAUGCaGGCGC- -5'
26263 3' -59.5 NC_005345.2 + 47102 0.66 0.469786
Target:  5'- cGCGGCCCGC-CGGgccGCG-CCGgGc -3'
miRNA:   3'- cCGCCGGGCGaGCUacaUGCaGGCgC- -5'
26263 3' -59.5 NC_005345.2 + 46483 0.66 0.469786
Target:  5'- cGCGGCCuCGC-CGAUcaaGU-CGgCCGCGa -3'
miRNA:   3'- cCGCCGG-GCGaGCUA---CAuGCaGGCGC- -5'
26263 3' -59.5 NC_005345.2 + 46035 0.77 0.100158
Target:  5'- gGGCGGCCC-CUCG--GUAUGUCCGgGg -3'
miRNA:   3'- -CCGCCGGGcGAGCuaCAUGCAGGCgC- -5'
26263 3' -59.5 NC_005345.2 + 45470 0.67 0.423404
Target:  5'- cGGCGGCCggggugggcaugucgGCgaaggUGGUGggggccGCGUCCGCGa -3'
miRNA:   3'- -CCGCCGGg--------------CGa----GCUACa-----UGCAGGCGC- -5'
26263 3' -59.5 NC_005345.2 + 44997 0.66 0.469786
Target:  5'- cGCGucgacaCCCGCUCGAcGaGCG-CCGCGa -3'
miRNA:   3'- cCGCc-----GGGCGAGCUaCaUGCaGGCGC- -5'
26263 3' -59.5 NC_005345.2 + 43979 0.71 0.258471
Target:  5'- cGGCGGCUCGCcCGAcucGU-CGgccgCCGCGg -3'
miRNA:   3'- -CCGCCGGGCGaGCUa--CAuGCa---GGCGC- -5'
26263 3' -59.5 NC_005345.2 + 43645 0.67 0.422486
Target:  5'- cGCGGuaguagcgacCCCGCUCGGU-UGCGaCCGCc -3'
miRNA:   3'- cCGCC----------GGGCGAGCUAcAUGCaGGCGc -5'
26263 3' -59.5 NC_005345.2 + 42694 1.11 0.000297
Target:  5'- cGGCGGCCCGCUCGAUGUACGUCCGCGa -3'
miRNA:   3'- -CCGCCGGGCGAGCUACAUGCAGGCGC- -5'
26263 3' -59.5 NC_005345.2 + 41051 0.66 0.489452
Target:  5'- uGCGGCCgcacUGCUCGccgaacagcUGU-CGUCCGCu -3'
miRNA:   3'- cCGCCGG----GCGAGCu--------ACAuGCAGGCGc -5'
26263 3' -59.5 NC_005345.2 + 40757 0.66 0.509494
Target:  5'- gGGCGGaCCGUUCGGccgcCGgCCGCGg -3'
miRNA:   3'- -CCGCCgGGCGAGCUacauGCaGGCGC- -5'
26263 3' -59.5 NC_005345.2 + 40098 0.69 0.345028
Target:  5'- uGGCGccgcGCCUGCUCGGUGUcacACG-CCGa- -3'
miRNA:   3'- -CCGC----CGGGCGAGCUACA---UGCaGGCgc -5'
26263 3' -59.5 NC_005345.2 + 39560 0.69 0.345028
Target:  5'- cGCGGCCgGUcccggcCGGUcGUGCGUUCGCa -3'
miRNA:   3'- cCGCCGGgCGa-----GCUA-CAUGCAGGCGc -5'
26263 3' -59.5 NC_005345.2 + 39483 0.71 0.258471
Target:  5'- cGGCGGC--GCUCGcgGUACGUcagcCCGCc -3'
miRNA:   3'- -CCGCCGggCGAGCuaCAUGCA----GGCGc -5'
26263 3' -59.5 NC_005345.2 + 39432 0.66 0.469786
Target:  5'- cGCGGCCCGCgcggCGcgGcucACG-CgGCGg -3'
miRNA:   3'- cCGCCGGGCGa---GCuaCa--UGCaGgCGC- -5'
26263 3' -59.5 NC_005345.2 + 39069 0.67 0.450532
Target:  5'- aGGCGGCgaucgaguggaCGCUCGccGcgACGUCgGCGu -3'
miRNA:   3'- -CCGCCGg----------GCGAGCuaCa-UGCAGgCGC- -5'
26263 3' -59.5 NC_005345.2 + 37895 0.67 0.450532
Target:  5'- cGGCGguGCCCGUcacggccggagUCGA-GUcagcGCGUUCGCGg -3'
miRNA:   3'- -CCGC--CGGGCG-----------AGCUaCA----UGCAGGCGC- -5'
26263 3' -59.5 NC_005345.2 + 37443 0.72 0.205854
Target:  5'- cGGCGGCCCGCuggUCGGccGU-CGaUCCGCc -3'
miRNA:   3'- -CCGCCGGGCG---AGCUa-CAuGC-AGGCGc -5'
26263 3' -59.5 NC_005345.2 + 35827 0.73 0.185597
Target:  5'- -uCGGCCCGCUCGGUGgg-GUUCGgGg -3'
miRNA:   3'- ccGCCGGGCGAGCUACaugCAGGCgC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.