miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26264 5' -50.5 NC_005345.2 + 41075 0.66 0.926376
Target:  5'- -aGCCCGGccgcCUGCUCGG-CggCGAGc -3'
miRNA:   3'- agUGGGCUuu--GACGAGCUaGaaGCUC- -5'
26264 5' -50.5 NC_005345.2 + 32513 0.66 0.926376
Target:  5'- cUCugCCGGcgGGCgGCcCGAUCUgcgCGGGu -3'
miRNA:   3'- -AGugGGCU--UUGaCGaGCUAGAa--GCUC- -5'
26264 5' -50.5 NC_005345.2 + 21107 0.66 0.913853
Target:  5'- aCACCCGccGAaaGCUCGA-CgacgUCGAGg -3'
miRNA:   3'- aGUGGGCu-UUgaCGAGCUaGa---AGCUC- -5'
26264 5' -50.5 NC_005345.2 + 22982 0.66 0.907148
Target:  5'- aCACCCGcGAACUcggGCUCGGgguccUCgcCGAGg -3'
miRNA:   3'- aGUGGGC-UUUGA---CGAGCU-----AGaaGCUC- -5'
26264 5' -50.5 NC_005345.2 + 6495 0.66 0.902983
Target:  5'- -aGCCCGAGGCguggacgccgcaggGCUCGAagaUCGAGc -3'
miRNA:   3'- agUGGGCUUUGa-------------CGAGCUagaAGCUC- -5'
26264 5' -50.5 NC_005345.2 + 17973 0.66 0.900149
Target:  5'- cCugCCGGGccGCgGcCUCGAUCUcccgugUCGAGg -3'
miRNA:   3'- aGugGGCUU--UGaC-GAGCUAGA------AGCUC- -5'
26264 5' -50.5 NC_005345.2 + 10932 0.66 0.900149
Target:  5'- -aGCCCGuAGCgucccGCUCGAUCgacUCGGu -3'
miRNA:   3'- agUGGGCuUUGa----CGAGCUAGa--AGCUc -5'
26264 5' -50.5 NC_005345.2 + 26138 0.67 0.892861
Target:  5'- uUCGCCCGGA--UGCcCGAccUCggCGAGg -3'
miRNA:   3'- -AGUGGGCUUugACGaGCU--AGaaGCUC- -5'
26264 5' -50.5 NC_005345.2 + 27509 0.67 0.892861
Target:  5'- cCGCCCGAGccGCUGaggaUCGAUCUcccgccCGAu -3'
miRNA:   3'- aGUGGGCUU--UGACg---AGCUAGAa-----GCUc -5'
26264 5' -50.5 NC_005345.2 + 9533 0.67 0.885289
Target:  5'- -gACCCGGAGCUGUUCcacccggaGAUCgggCGGa -3'
miRNA:   3'- agUGGGCUUUGACGAG--------CUAGaa-GCUc -5'
26264 5' -50.5 NC_005345.2 + 19827 0.67 0.877438
Target:  5'- aCACCCGggGCgGC-CGAcagCUUCcAGg -3'
miRNA:   3'- aGUGGGCuuUGaCGaGCUa--GAAGcUC- -5'
26264 5' -50.5 NC_005345.2 + 45200 0.67 0.877438
Target:  5'- cCGCCCGAGagGCUGC-CGGccgCggCGAGc -3'
miRNA:   3'- aGUGGGCUU--UGACGaGCUa--GaaGCUC- -5'
26264 5' -50.5 NC_005345.2 + 8395 0.67 0.869314
Target:  5'- -gGCCCGAcgagccGCUGC-CGGUCgaCGGGg -3'
miRNA:   3'- agUGGGCUu-----UGACGaGCUAGaaGCUC- -5'
26264 5' -50.5 NC_005345.2 + 34229 0.67 0.86599
Target:  5'- uUCGCCCGggGCgGCacggccgcgaacgCGGUCcUCGAc -3'
miRNA:   3'- -AGUGGGCuuUGaCGa------------GCUAGaAGCUc -5'
26264 5' -50.5 NC_005345.2 + 13834 0.67 0.860925
Target:  5'- aUCGCCCGGAA--GCUCGGcg--CGAGg -3'
miRNA:   3'- -AGUGGGCUUUgaCGAGCUagaaGCUC- -5'
26264 5' -50.5 NC_005345.2 + 31080 0.68 0.83425
Target:  5'- gCACCCGGucccagaggGACgGCUCGGguUCggguUCGAGg -3'
miRNA:   3'- aGUGGGCU---------UUGaCGAGCU--AGa---AGCUC- -5'
26264 5' -50.5 NC_005345.2 + 27249 0.68 0.831465
Target:  5'- aCGCCCGGAGCgagggGCggaaccggcugcugUCGAUCacCGAGa -3'
miRNA:   3'- aGUGGGCUUUGa----CG--------------AGCUAGaaGCUC- -5'
26264 5' -50.5 NC_005345.2 + 19347 0.68 0.824887
Target:  5'- cUCGCCgGggGCgaGCgCGuagucGUCUUCGAGg -3'
miRNA:   3'- -AGUGGgCuuUGa-CGaGC-----UAGAAGCUC- -5'
26264 5' -50.5 NC_005345.2 + 39707 0.68 0.815306
Target:  5'- cCGCCCGGGACgaGCUCGggCcaCGAc -3'
miRNA:   3'- aGUGGGCUUUGa-CGAGCuaGaaGCUc -5'
26264 5' -50.5 NC_005345.2 + 39273 0.69 0.805518
Target:  5'- -gGCCCGcuGCUGCUCG----UCGAGc -3'
miRNA:   3'- agUGGGCuuUGACGAGCuagaAGCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.