Results 1 - 20 of 31 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26264 | 5' | -50.5 | NC_005345.2 | + | 27249 | 0.68 | 0.831465 |
Target: 5'- aCGCCCGGAGCgagggGCggaaccggcugcugUCGAUCacCGAGa -3' miRNA: 3'- aGUGGGCUUUGa----CG--------------AGCUAGaaGCUC- -5' |
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26264 | 5' | -50.5 | NC_005345.2 | + | 35720 | 0.69 | 0.764528 |
Target: 5'- aCGCgCCGAAACUGCUCGcccgCggCGGc -3' miRNA: 3'- aGUG-GGCUUUGACGAGCua--GaaGCUc -5' |
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26264 | 5' | -50.5 | NC_005345.2 | + | 42055 | 0.7 | 0.753883 |
Target: 5'- -aGCCCGAGuuaccgGCUGCUCGG-CgacagcgUCGAGc -3' miRNA: 3'- agUGGGCUU------UGACGAGCUaGa------AGCUC- -5' |
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26264 | 5' | -50.5 | NC_005345.2 | + | 16640 | 0.7 | 0.732205 |
Target: 5'- gUCACuCCGguGCUGUUCGucAUCacggUCGAGg -3' miRNA: 3'- -AGUG-GGCuuUGACGAGC--UAGa---AGCUC- -5' |
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26264 | 5' | -50.5 | NC_005345.2 | + | 28499 | 0.7 | 0.721197 |
Target: 5'- aUCACCCauGGAACU-CUCGAUCaagacgcagacgUUCGGGg -3' miRNA: 3'- -AGUGGG--CUUUGAcGAGCUAG------------AAGCUC- -5' |
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26264 | 5' | -50.5 | NC_005345.2 | + | 44804 | 0.72 | 0.642182 |
Target: 5'- cCGCCCGAGGCaggaccccgGCUCGGcCgaugUCGAGa -3' miRNA: 3'- aGUGGGCUUUGa--------CGAGCUaGa---AGCUC- -5' |
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26264 | 5' | -50.5 | NC_005345.2 | + | 6495 | 0.66 | 0.902983 |
Target: 5'- -aGCCCGAGGCguggacgccgcaggGCUCGAagaUCGAGc -3' miRNA: 3'- agUGGGCUUUGa-------------CGAGCUagaAGCUC- -5' |
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26264 | 5' | -50.5 | NC_005345.2 | + | 26138 | 0.67 | 0.892861 |
Target: 5'- uUCGCCCGGA--UGCcCGAccUCggCGAGg -3' miRNA: 3'- -AGUGGGCUUugACGaGCU--AGaaGCUC- -5' |
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26264 | 5' | -50.5 | NC_005345.2 | + | 45200 | 0.67 | 0.877438 |
Target: 5'- cCGCCCGAGagGCUGC-CGGccgCggCGAGc -3' miRNA: 3'- aGUGGGCUU--UGACGaGCUa--GaaGCUC- -5' |
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26264 | 5' | -50.5 | NC_005345.2 | + | 19827 | 0.67 | 0.877438 |
Target: 5'- aCACCCGggGCgGC-CGAcagCUUCcAGg -3' miRNA: 3'- aGUGGGCuuUGaCGaGCUa--GAAGcUC- -5' |
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26264 | 5' | -50.5 | NC_005345.2 | + | 34229 | 0.67 | 0.86599 |
Target: 5'- uUCGCCCGggGCgGCacggccgcgaacgCGGUCcUCGAc -3' miRNA: 3'- -AGUGGGCuuUGaCGa------------GCUAGaAGCUc -5' |
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26264 | 5' | -50.5 | NC_005345.2 | + | 21107 | 0.66 | 0.913853 |
Target: 5'- aCACCCGccGAaaGCUCGA-CgacgUCGAGg -3' miRNA: 3'- aGUGGGCu-UUgaCGAGCUaGa---AGCUC- -5' |
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26264 | 5' | -50.5 | NC_005345.2 | + | 8395 | 0.67 | 0.869314 |
Target: 5'- -gGCCCGAcgagccGCUGC-CGGUCgaCGGGg -3' miRNA: 3'- agUGGGCUu-----UGACGaGCUAGaaGCUC- -5' |
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26264 | 5' | -50.5 | NC_005345.2 | + | 9533 | 0.67 | 0.885289 |
Target: 5'- -gACCCGGAGCUGUUCcacccggaGAUCgggCGGa -3' miRNA: 3'- agUGGGCUUUGACGAG--------CUAGaa-GCUc -5' |
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26264 | 5' | -50.5 | NC_005345.2 | + | 32513 | 0.66 | 0.926376 |
Target: 5'- cUCugCCGGcgGGCgGCcCGAUCUgcgCGGGu -3' miRNA: 3'- -AGugGGCU--UUGaCGaGCUAGAa--GCUC- -5' |
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26264 | 5' | -50.5 | NC_005345.2 | + | 35569 | 0.69 | 0.785366 |
Target: 5'- cUCGCCCGGGACg---CGAUCU-CGAa -3' miRNA: 3'- -AGUGGGCUUUGacgaGCUAGAaGCUc -5' |
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26264 | 5' | -50.5 | NC_005345.2 | + | 42627 | 1.09 | 0.002726 |
Target: 5'- aUCACCCGAAACUGCUCGAUCUUCGAGc -3' miRNA: 3'- -AGUGGGCUUUGACGAGCUAGAAGCUC- -5' |
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26264 | 5' | -50.5 | NC_005345.2 | + | 24490 | 0.78 | 0.324631 |
Target: 5'- cUCGCCCGuGAGCcGCUCGAUCggCGAc -3' miRNA: 3'- -AGUGGGC-UUUGaCGAGCUAGaaGCUc -5' |
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26264 | 5' | -50.5 | NC_005345.2 | + | 34314 | 0.73 | 0.562621 |
Target: 5'- -aGCCCGGcaAGCUGCUCGggCgUCGAc -3' miRNA: 3'- agUGGGCU--UUGACGAGCuaGaAGCUc -5' |
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26264 | 5' | -50.5 | NC_005345.2 | + | 42255 | 0.73 | 0.585192 |
Target: 5'- uUCACCUGucGCUGCUCGAUCcacaugCGcAGc -3' miRNA: 3'- -AGUGGGCuuUGACGAGCUAGaa----GC-UC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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