Results 1 - 20 of 31 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26264 | 5' | -50.5 | NC_005345.2 | + | 41075 | 0.66 | 0.926376 |
Target: 5'- -aGCCCGGccgcCUGCUCGG-CggCGAGc -3' miRNA: 3'- agUGGGCUuu--GACGAGCUaGaaGCUC- -5' |
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26264 | 5' | -50.5 | NC_005345.2 | + | 42627 | 1.09 | 0.002726 |
Target: 5'- aUCACCCGAAACUGCUCGAUCUUCGAGc -3' miRNA: 3'- -AGUGGGCUUUGACGAGCUAGAAGCUC- -5' |
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26264 | 5' | -50.5 | NC_005345.2 | + | 24490 | 0.78 | 0.324631 |
Target: 5'- cUCGCCCGuGAGCcGCUCGAUCggCGAc -3' miRNA: 3'- -AGUGGGC-UUUGaCGAGCUAGaaGCUc -5' |
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26264 | 5' | -50.5 | NC_005345.2 | + | 34314 | 0.73 | 0.562621 |
Target: 5'- -aGCCCGGcaAGCUGCUCGggCgUCGAc -3' miRNA: 3'- agUGGGCU--UUGACGAGCuaGaAGCUc -5' |
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26264 | 5' | -50.5 | NC_005345.2 | + | 42255 | 0.73 | 0.585192 |
Target: 5'- uUCACCUGucGCUGCUCGAUCcacaugCGcAGc -3' miRNA: 3'- -AGUGGGCuuUGACGAGCUAGaa----GC-UC- -5' |
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26264 | 5' | -50.5 | NC_005345.2 | + | 39656 | 0.7 | 0.721197 |
Target: 5'- -gGCCCGcGACUGCcacUCGGUCUcagcCGAGu -3' miRNA: 3'- agUGGGCuUUGACG---AGCUAGAa---GCUC- -5' |
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26264 | 5' | -50.5 | NC_005345.2 | + | 39273 | 0.69 | 0.805518 |
Target: 5'- -gGCCCGcuGCUGCUCG----UCGAGc -3' miRNA: 3'- agUGGGCuuUGACGAGCuagaAGCUC- -5' |
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26264 | 5' | -50.5 | NC_005345.2 | + | 39707 | 0.68 | 0.815306 |
Target: 5'- cCGCCCGGGACgaGCUCGggCcaCGAc -3' miRNA: 3'- aGUGGGCUUUGa-CGAGCuaGaaGCUc -5' |
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26264 | 5' | -50.5 | NC_005345.2 | + | 19347 | 0.68 | 0.824887 |
Target: 5'- cUCGCCgGggGCgaGCgCGuagucGUCUUCGAGg -3' miRNA: 3'- -AGUGGgCuuUGa-CGaGC-----UAGAAGCUC- -5' |
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26264 | 5' | -50.5 | NC_005345.2 | + | 22982 | 0.66 | 0.907148 |
Target: 5'- aCACCCGcGAACUcggGCUCGGgguccUCgcCGAGg -3' miRNA: 3'- aGUGGGC-UUUGA---CGAGCU-----AGaaGCUC- -5' |
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26264 | 5' | -50.5 | NC_005345.2 | + | 17973 | 0.66 | 0.900149 |
Target: 5'- cCugCCGGGccGCgGcCUCGAUCUcccgugUCGAGg -3' miRNA: 3'- aGugGGCUU--UGaC-GAGCUAGA------AGCUC- -5' |
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26264 | 5' | -50.5 | NC_005345.2 | + | 10932 | 0.66 | 0.900149 |
Target: 5'- -aGCCCGuAGCgucccGCUCGAUCgacUCGGu -3' miRNA: 3'- agUGGGCuUUGa----CGAGCUAGa--AGCUc -5' |
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26264 | 5' | -50.5 | NC_005345.2 | + | 27509 | 0.67 | 0.892861 |
Target: 5'- cCGCCCGAGccGCUGaggaUCGAUCUcccgccCGAu -3' miRNA: 3'- aGUGGGCUU--UGACg---AGCUAGAa-----GCUc -5' |
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26264 | 5' | -50.5 | NC_005345.2 | + | 13834 | 0.67 | 0.860925 |
Target: 5'- aUCGCCCGGAA--GCUCGGcg--CGAGg -3' miRNA: 3'- -AGUGGGCUUUgaCGAGCUagaaGCUC- -5' |
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26264 | 5' | -50.5 | NC_005345.2 | + | 31080 | 0.68 | 0.83425 |
Target: 5'- gCACCCGGucccagaggGACgGCUCGGguUCggguUCGAGg -3' miRNA: 3'- aGUGGGCU---------UUGaCGAGCU--AGa---AGCUC- -5' |
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26264 | 5' | -50.5 | NC_005345.2 | + | 32513 | 0.66 | 0.926376 |
Target: 5'- cUCugCCGGcgGGCgGCcCGAUCUgcgCGGGu -3' miRNA: 3'- -AGugGGCU--UUGaCGaGCUAGAa--GCUC- -5' |
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26264 | 5' | -50.5 | NC_005345.2 | + | 28499 | 0.7 | 0.721197 |
Target: 5'- aUCACCCauGGAACU-CUCGAUCaagacgcagacgUUCGGGg -3' miRNA: 3'- -AGUGGG--CUUUGAcGAGCUAG------------AAGCUC- -5' |
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26264 | 5' | -50.5 | NC_005345.2 | + | 16640 | 0.7 | 0.732205 |
Target: 5'- gUCACuCCGguGCUGUUCGucAUCacggUCGAGg -3' miRNA: 3'- -AGUG-GGCuuUGACGAGC--UAGa---AGCUC- -5' |
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26264 | 5' | -50.5 | NC_005345.2 | + | 42055 | 0.7 | 0.753883 |
Target: 5'- -aGCCCGAGuuaccgGCUGCUCGG-CgacagcgUCGAGc -3' miRNA: 3'- agUGGGCUU------UGACGAGCUaGa------AGCUC- -5' |
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26264 | 5' | -50.5 | NC_005345.2 | + | 35720 | 0.69 | 0.764528 |
Target: 5'- aCGCgCCGAAACUGCUCGcccgCggCGGc -3' miRNA: 3'- aGUG-GGCUUUGACGAGCua--GaaGCUc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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