Results 21 - 40 of 40 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26265 | 3' | -55.2 | NC_005345.2 | + | 27134 | 0.71 | 0.388314 |
Target: 5'- cCGUCCggcggGCCcgGCAUGCCG-CcGUGCGGCa -3' miRNA: 3'- -GCAGG-----CGG--CGUAUGGUuGaCACGCUG- -5' |
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26265 | 3' | -55.2 | NC_005345.2 | + | 27580 | 0.68 | 0.571161 |
Target: 5'- cCGUCgGgCCGUcucgcGCCAAC-GUGCGGCg -3' miRNA: 3'- -GCAGgC-GGCGua---UGGUUGaCACGCUG- -5' |
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26265 | 3' | -55.2 | NC_005345.2 | + | 30108 | 0.71 | 0.416182 |
Target: 5'- gGUUCGCCGaccccCGUACCGACggcucgGgcgGCGACg -3' miRNA: 3'- gCAGGCGGC-----GUAUGGUUGa-----Ca--CGCUG- -5' |
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26265 | 3' | -55.2 | NC_005345.2 | + | 30164 | 0.67 | 0.64868 |
Target: 5'- uCGUcCCGCCG---GCCAGCg--GCGACc -3' miRNA: 3'- -GCA-GGCGGCguaUGGUUGacaCGCUG- -5' |
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26265 | 3' | -55.2 | NC_005345.2 | + | 34584 | 0.69 | 0.503384 |
Target: 5'- uGUCCGCCGUGUcggacgcguucagcGCCGGCgucaacuggGUGCG-Cg -3' miRNA: 3'- gCAGGCGGCGUA--------------UGGUUGa--------CACGCuG- -5' |
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26265 | 3' | -55.2 | NC_005345.2 | + | 34728 | 0.71 | 0.36955 |
Target: 5'- uGUUCGCCGUAUACCGcggggugauccucGCg--GCGGCg -3' miRNA: 3'- gCAGGCGGCGUAUGGU-------------UGacaCGCUG- -5' |
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26265 | 3' | -55.2 | NC_005345.2 | + | 35584 | 0.66 | 0.681869 |
Target: 5'- uCGUCgCGCCGcCGUGCCcguggaUGUGguCGACg -3' miRNA: 3'- -GCAG-GCGGC-GUAUGGuug---ACAC--GCUG- -5' |
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26265 | 3' | -55.2 | NC_005345.2 | + | 36396 | 0.74 | 0.268335 |
Target: 5'- aCGUCUGCCGCG-GCCGGgUG-GCGAUc -3' miRNA: 3'- -GCAGGCGGCGUaUGGUUgACaCGCUG- -5' |
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26265 | 3' | -55.2 | NC_005345.2 | + | 37232 | 0.69 | 0.517114 |
Target: 5'- uGUCgGCgGCGUGCCGuaguaGCgg-GCGACg -3' miRNA: 3'- gCAGgCGgCGUAUGGU-----UGacaCGCUG- -5' |
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26265 | 3' | -55.2 | NC_005345.2 | + | 37351 | 0.69 | 0.485675 |
Target: 5'- aCG-CCGCgGCGUGCCcgagcAGCUuUGCGGCc -3' miRNA: 3'- -GCaGGCGgCGUAUGG-----UUGAcACGCUG- -5' |
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26265 | 3' | -55.2 | NC_005345.2 | + | 37494 | 0.66 | 0.670839 |
Target: 5'- aGUUgGCCGC-UACCGccGCcGUGCaGGCg -3' miRNA: 3'- gCAGgCGGCGuAUGGU--UGaCACG-CUG- -5' |
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26265 | 3' | -55.2 | NC_005345.2 | + | 38365 | 0.66 | 0.670839 |
Target: 5'- cCGcCUGCCGCA-GCgCGGCUGUcuCGACg -3' miRNA: 3'- -GCaGGCGGCGUaUG-GUUGACAc-GCUG- -5' |
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26265 | 3' | -55.2 | NC_005345.2 | + | 40736 | 0.66 | 0.670839 |
Target: 5'- gCGUCCaGCCGCGccccgucgACCGGCa--GCGGCu -3' miRNA: 3'- -GCAGG-CGGCGUa-------UGGUUGacaCGCUG- -5' |
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26265 | 3' | -55.2 | NC_005345.2 | + | 41079 | 0.69 | 0.517114 |
Target: 5'- uCGUCCGCUGUAcacgACCAgGCUGUuuacGCGGg -3' miRNA: 3'- -GCAGGCGGCGUa---UGGU-UGACA----CGCUg -5' |
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26265 | 3' | -55.2 | NC_005345.2 | + | 41121 | 0.66 | 0.69285 |
Target: 5'- aCGcCCGCgGUAcggggcuCCGACUG-GCGGCu -3' miRNA: 3'- -GCaGGCGgCGUau-----GGUUGACaCGCUG- -5' |
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26265 | 3' | -55.2 | NC_005345.2 | + | 42038 | 0.76 | 0.193834 |
Target: 5'- aCGUCCcCCGCAccggcagcccgaguUACCGGCUGcucgGCGACa -3' miRNA: 3'- -GCAGGcGGCGU--------------AUGGUUGACa---CGCUG- -5' |
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26265 | 3' | -55.2 | NC_005345.2 | + | 42345 | 1.09 | 0.000813 |
Target: 5'- gCGUCCGCCGCAUACCAACUGUGCGACu -3' miRNA: 3'- -GCAGGCGGCGUAUGGUUGACACGCUG- -5' |
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26265 | 3' | -55.2 | NC_005345.2 | + | 45813 | 0.66 | 0.670839 |
Target: 5'- uCGUCCGUCGUcgcgaccgugacGUGCaCGGCg--GCGGCg -3' miRNA: 3'- -GCAGGCGGCG------------UAUG-GUUGacaCGCUG- -5' |
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26265 | 3' | -55.2 | NC_005345.2 | + | 46010 | 0.66 | 0.681869 |
Target: 5'- ---aCGCCGUcgGCaCGGCUGUGCaguGGCg -3' miRNA: 3'- gcagGCGGCGuaUG-GUUGACACG---CUG- -5' |
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26265 | 3' | -55.2 | NC_005345.2 | + | 47724 | 0.68 | 0.571161 |
Target: 5'- aG-CUGCgGC-UGCCAGCUGUGCa-- -3' miRNA: 3'- gCaGGCGgCGuAUGGUUGACACGcug -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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