miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26265 3' -55.2 NC_005345.2 + 1239 0.67 0.64868
Target:  5'- aCGUCCGuUCGCGgACCuGC-GUGCGGa -3'
miRNA:   3'- -GCAGGC-GGCGUaUGGuUGaCACGCUg -5'
26265 3' -55.2 NC_005345.2 + 3827 0.69 0.506539
Target:  5'- uCGUCCGCUGCGaggUCGGCggcGUGCGGa -3'
miRNA:   3'- -GCAGGCGGCGUau-GGUUGa--CACGCUg -5'
26265 3' -55.2 NC_005345.2 + 4017 0.69 0.527776
Target:  5'- gCGUCCGCguUGUcccGCCc-CUGUGCGACg -3'
miRNA:   3'- -GCAGGCG--GCGua-UGGuuGACACGCUG- -5'
26265 3' -55.2 NC_005345.2 + 4885 0.66 0.703771
Target:  5'- cCGgcgCCGCUGCGagucgaUGCUcgccgAGCUGcUGCGGCa -3'
miRNA:   3'- -GCa--GGCGGCGU------AUGG-----UUGAC-ACGCUG- -5'
26265 3' -55.2 NC_005345.2 + 5095 0.69 0.488779
Target:  5'- -uUCCGCCGCGagcgcggcaucccgaUGCCcuccuacGGCgGUGCGGCa -3'
miRNA:   3'- gcAGGCGGCGU---------------AUGG-------UUGaCACGCUG- -5'
26265 3' -55.2 NC_005345.2 + 5280 0.66 0.703771
Target:  5'- gCGcUCCGCCGCGgagucccgGCCGACgccccGU-CGACc -3'
miRNA:   3'- -GC-AGGCGGCGUa-------UGGUUGa----CAcGCUG- -5'
26265 3' -55.2 NC_005345.2 + 5648 0.66 0.659773
Target:  5'- gGUUCGCCGCG-ACC--UUG-GCGGCg -3'
miRNA:   3'- gCAGGCGGCGUaUGGuuGACaCGCUG- -5'
26265 3' -55.2 NC_005345.2 + 6239 0.71 0.397467
Target:  5'- gGU-CGCCG-GUACgAACUGUGUGACa -3'
miRNA:   3'- gCAgGCGGCgUAUGgUUGACACGCUG- -5'
26265 3' -55.2 NC_005345.2 + 7842 0.66 0.659773
Target:  5'- gCGUCCaGCCGCcggcGCCGGCaccgagGCGGCc -3'
miRNA:   3'- -GCAGG-CGGCGua--UGGUUGaca---CGCUG- -5'
26265 3' -55.2 NC_005345.2 + 8725 0.68 0.582153
Target:  5'- uCGUCCGUCGCcggcggcgauccGUACgGACgcgucggcgGUGUGGCu -3'
miRNA:   3'- -GCAGGCGGCG------------UAUGgUUGa--------CACGCUG- -5'
26265 3' -55.2 NC_005345.2 + 11725 0.74 0.254808
Target:  5'- cCG-CCGCCGCGUACCAACUcgccgcaCGACu -3'
miRNA:   3'- -GCaGGCGGCGUAUGGUUGAcac----GCUG- -5'
26265 3' -55.2 NC_005345.2 + 14818 0.67 0.637572
Target:  5'- gGUCUucgGCCuGCGUGCCGAacaggGCGACg -3'
miRNA:   3'- gCAGG---CGG-CGUAUGGUUgaca-CGCUG- -5'
26265 3' -55.2 NC_005345.2 + 15333 0.74 0.2615
Target:  5'- gCGUCgGCCgggGCGUAgCGGgUGUGCGGCg -3'
miRNA:   3'- -GCAGgCGG---CGUAUgGUUgACACGCUG- -5'
26265 3' -55.2 NC_005345.2 + 18783 0.67 0.615351
Target:  5'- gCGcCCGCCGCGggcUGCCGucggGCaggGUGaCGGCg -3'
miRNA:   3'- -GCaGGCGGCGU---AUGGU----UGa--CAC-GCUG- -5'
26265 3' -55.2 NC_005345.2 + 20173 0.69 0.527776
Target:  5'- --cCCGCCGCAUuCCGA---UGCGGCg -3'
miRNA:   3'- gcaGGCGGCGUAuGGUUgacACGCUG- -5'
26265 3' -55.2 NC_005345.2 + 22318 0.66 0.670839
Target:  5'- uCGgCgCGCCGgGUGCCGGCagcagUGaUGCGGCg -3'
miRNA:   3'- -GCaG-GCGGCgUAUGGUUG-----AC-ACGCUG- -5'
26265 3' -55.2 NC_005345.2 + 23567 0.68 0.582153
Target:  5'- uGUCgGCCGCGU-CCgAGCUGcggcUGCGGg -3'
miRNA:   3'- gCAGgCGGCGUAuGG-UUGAC----ACGCUg -5'
26265 3' -55.2 NC_005345.2 + 24300 0.68 0.549335
Target:  5'- cCGUCaCGCCGCGggACCGcUUGcGCGAg -3'
miRNA:   3'- -GCAG-GCGGCGUa-UGGUuGACaCGCUg -5'
26265 3' -55.2 NC_005345.2 + 25547 0.68 0.560219
Target:  5'- gGUCCGCCgGCGUcgcGCCgAACgccGCGACc -3'
miRNA:   3'- gCAGGCGG-CGUA---UGG-UUGacaCGCUG- -5'
26265 3' -55.2 NC_005345.2 + 27096 0.66 0.668629
Target:  5'- uGUCUGCCGuCAUgGCCGACaUGcucggcgccacgGCGGCa -3'
miRNA:   3'- gCAGGCGGC-GUA-UGGUUG-ACa-----------CGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.