miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26265 3' -55.2 NC_005345.2 + 42038 0.76 0.193834
Target:  5'- aCGUCCcCCGCAccggcagcccgaguUACCGGCUGcucgGCGACa -3'
miRNA:   3'- -GCAGGcGGCGU--------------AUGGUUGACa---CGCUG- -5'
26265 3' -55.2 NC_005345.2 + 23567 0.68 0.582153
Target:  5'- uGUCgGCCGCGU-CCgAGCUGcggcUGCGGg -3'
miRNA:   3'- gCAGgCGGCGUAuGG-UUGAC----ACGCUg -5'
26265 3' -55.2 NC_005345.2 + 41079 0.69 0.517114
Target:  5'- uCGUCCGCUGUAcacgACCAgGCUGUuuacGCGGg -3'
miRNA:   3'- -GCAGGCGGCGUa---UGGU-UGACA----CGCUg -5'
26265 3' -55.2 NC_005345.2 + 3827 0.69 0.506539
Target:  5'- uCGUCCGCUGCGaggUCGGCggcGUGCGGa -3'
miRNA:   3'- -GCAGGCGGCGUau-GGUUGa--CACGCUg -5'
26265 3' -55.2 NC_005345.2 + 5095 0.69 0.488779
Target:  5'- -uUCCGCCGCGagcgcggcaucccgaUGCCcuccuacGGCgGUGCGGCa -3'
miRNA:   3'- gcAGGCGGCGU---------------AUGG-------UUGaCACGCUG- -5'
26265 3' -55.2 NC_005345.2 + 30108 0.71 0.416182
Target:  5'- gGUUCGCCGaccccCGUACCGACggcucgGgcgGCGACg -3'
miRNA:   3'- gCAGGCGGC-----GUAUGGUUGa-----Ca--CGCUG- -5'
26265 3' -55.2 NC_005345.2 + 5280 0.66 0.703771
Target:  5'- gCGcUCCGCCGCGgagucccgGCCGACgccccGU-CGACc -3'
miRNA:   3'- -GC-AGGCGGCGUa-------UGGUUGa----CAcGCUG- -5'
26265 3' -55.2 NC_005345.2 + 41121 0.66 0.69285
Target:  5'- aCGcCCGCgGUAcggggcuCCGACUG-GCGGCu -3'
miRNA:   3'- -GCaGGCGgCGUau-----GGUUGACaCGCUG- -5'
26265 3' -55.2 NC_005345.2 + 27096 0.66 0.668629
Target:  5'- uGUCUGCCGuCAUgGCCGACaUGcucggcgccacgGCGGCa -3'
miRNA:   3'- gCAGGCGGC-GUA-UGGUUG-ACa-----------CGCUG- -5'
26265 3' -55.2 NC_005345.2 + 8725 0.68 0.582153
Target:  5'- uCGUCCGUCGCcggcggcgauccGUACgGACgcgucggcgGUGUGGCu -3'
miRNA:   3'- -GCAGGCGGCG------------UAUGgUUGa--------CACGCUG- -5'
26265 3' -55.2 NC_005345.2 + 34584 0.69 0.503384
Target:  5'- uGUCCGCCGUGUcggacgcguucagcGCCGGCgucaacuggGUGCG-Cg -3'
miRNA:   3'- gCAGGCGGCGUA--------------UGGUUGa--------CACGCuG- -5'
26265 3' -55.2 NC_005345.2 + 11725 0.74 0.254808
Target:  5'- cCG-CCGCCGCGUACCAACUcgccgcaCGACu -3'
miRNA:   3'- -GCaGGCGGCGUAUGGUUGAcac----GCUG- -5'
26265 3' -55.2 NC_005345.2 + 37494 0.66 0.670839
Target:  5'- aGUUgGCCGC-UACCGccGCcGUGCaGGCg -3'
miRNA:   3'- gCAGgCGGCGuAUGGU--UGaCACG-CUG- -5'
26265 3' -55.2 NC_005345.2 + 15333 0.74 0.2615
Target:  5'- gCGUCgGCCgggGCGUAgCGGgUGUGCGGCg -3'
miRNA:   3'- -GCAGgCGG---CGUAUgGUUgACACGCUG- -5'
26265 3' -55.2 NC_005345.2 + 20173 0.69 0.527776
Target:  5'- --cCCGCCGCAUuCCGA---UGCGGCg -3'
miRNA:   3'- gcaGGCGGCGUAuGGUUgacACGCUG- -5'
26265 3' -55.2 NC_005345.2 + 46010 0.66 0.681869
Target:  5'- ---aCGCCGUcgGCaCGGCUGUGCaguGGCg -3'
miRNA:   3'- gcagGCGGCGuaUG-GUUGACACG---CUG- -5'
26265 3' -55.2 NC_005345.2 + 4885 0.66 0.703771
Target:  5'- cCGgcgCCGCUGCGagucgaUGCUcgccgAGCUGcUGCGGCa -3'
miRNA:   3'- -GCa--GGCGGCGU------AUGG-----UUGAC-ACGCUG- -5'
26265 3' -55.2 NC_005345.2 + 34728 0.71 0.36955
Target:  5'- uGUUCGCCGUAUACCGcggggugauccucGCg--GCGGCg -3'
miRNA:   3'- gCAGGCGGCGUAUGGU-------------UGacaCGCUG- -5'
26265 3' -55.2 NC_005345.2 + 1239 0.67 0.64868
Target:  5'- aCGUCCGuUCGCGgACCuGC-GUGCGGa -3'
miRNA:   3'- -GCAGGC-GGCGUaUGGuUGaCACGCUg -5'
26265 3' -55.2 NC_005345.2 + 4017 0.69 0.527776
Target:  5'- gCGUCCGCguUGUcccGCCc-CUGUGCGACg -3'
miRNA:   3'- -GCAGGCG--GCGua-UGGuuGACACGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.