Results 1 - 20 of 40 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26265 | 3' | -55.2 | NC_005345.2 | + | 42345 | 1.09 | 0.000813 |
Target: 5'- gCGUCCGCCGCAUACCAACUGUGCGACu -3' miRNA: 3'- -GCAGGCGGCGUAUGGUUGACACGCUG- -5' |
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26265 | 3' | -55.2 | NC_005345.2 | + | 25547 | 0.68 | 0.560219 |
Target: 5'- gGUCCGCCgGCGUcgcGCCgAACgccGCGACc -3' miRNA: 3'- gCAGGCGG-CGUA---UGG-UUGacaCGCUG- -5' |
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26265 | 3' | -55.2 | NC_005345.2 | + | 24300 | 0.68 | 0.549335 |
Target: 5'- cCGUCaCGCCGCGggACCGcUUGcGCGAg -3' miRNA: 3'- -GCAG-GCGGCGUa-UGGUuGACaCGCUg -5' |
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26265 | 3' | -55.2 | NC_005345.2 | + | 4017 | 0.69 | 0.527776 |
Target: 5'- gCGUCCGCguUGUcccGCCc-CUGUGCGACg -3' miRNA: 3'- -GCAGGCG--GCGua-UGGuuGACACGCUG- -5' |
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26265 | 3' | -55.2 | NC_005345.2 | + | 37232 | 0.69 | 0.517114 |
Target: 5'- uGUCgGCgGCGUGCCGuaguaGCgg-GCGACg -3' miRNA: 3'- gCAGgCGgCGUAUGGU-----UGacaCGCUG- -5' |
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26265 | 3' | -55.2 | NC_005345.2 | + | 37351 | 0.69 | 0.485675 |
Target: 5'- aCG-CCGCgGCGUGCCcgagcAGCUuUGCGGCc -3' miRNA: 3'- -GCaGGCGgCGUAUGG-----UUGAcACGCUG- -5' |
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26265 | 3' | -55.2 | NC_005345.2 | + | 6239 | 0.71 | 0.397467 |
Target: 5'- gGU-CGCCG-GUACgAACUGUGUGACa -3' miRNA: 3'- gCAgGCGGCgUAUGgUUGACACGCUG- -5' |
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26265 | 3' | -55.2 | NC_005345.2 | + | 27134 | 0.71 | 0.388314 |
Target: 5'- cCGUCCggcggGCCcgGCAUGCCG-CcGUGCGGCa -3' miRNA: 3'- -GCAGG-----CGG--CGUAUGGUuGaCACGCUG- -5' |
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26265 | 3' | -55.2 | NC_005345.2 | + | 36396 | 0.74 | 0.268335 |
Target: 5'- aCGUCUGCCGCG-GCCGGgUG-GCGAUc -3' miRNA: 3'- -GCAGGCGGCGUaUGGUUgACaCGCUG- -5' |
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26265 | 3' | -55.2 | NC_005345.2 | + | 47724 | 0.68 | 0.571161 |
Target: 5'- aG-CUGCgGC-UGCCAGCUGUGCa-- -3' miRNA: 3'- gCaGGCGgCGuAUGGUUGACACGcug -5' |
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26265 | 3' | -55.2 | NC_005345.2 | + | 27580 | 0.68 | 0.571161 |
Target: 5'- cCGUCgGgCCGUcucgcGCCAAC-GUGCGGCg -3' miRNA: 3'- -GCAGgC-GGCGua---UGGUUGaCACGCUG- -5' |
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26265 | 3' | -55.2 | NC_005345.2 | + | 18783 | 0.67 | 0.615351 |
Target: 5'- gCGcCCGCCGCGggcUGCCGucggGCaggGUGaCGGCg -3' miRNA: 3'- -GCaGGCGGCGU---AUGGU----UGa--CAC-GCUG- -5' |
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26265 | 3' | -55.2 | NC_005345.2 | + | 38365 | 0.66 | 0.670839 |
Target: 5'- cCGcCUGCCGCA-GCgCGGCUGUcuCGACg -3' miRNA: 3'- -GCaGGCGGCGUaUG-GUUGACAc-GCUG- -5' |
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26265 | 3' | -55.2 | NC_005345.2 | + | 40736 | 0.66 | 0.670839 |
Target: 5'- gCGUCCaGCCGCGccccgucgACCGGCa--GCGGCu -3' miRNA: 3'- -GCAGG-CGGCGUa-------UGGUUGacaCGCUG- -5' |
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26265 | 3' | -55.2 | NC_005345.2 | + | 22318 | 0.66 | 0.670839 |
Target: 5'- uCGgCgCGCCGgGUGCCGGCagcagUGaUGCGGCg -3' miRNA: 3'- -GCaG-GCGGCgUAUGGUUG-----AC-ACGCUG- -5' |
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26265 | 3' | -55.2 | NC_005345.2 | + | 45813 | 0.66 | 0.670839 |
Target: 5'- uCGUCCGUCGUcgcgaccgugacGUGCaCGGCg--GCGGCg -3' miRNA: 3'- -GCAGGCGGCG------------UAUG-GUUGacaCGCUG- -5' |
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26265 | 3' | -55.2 | NC_005345.2 | + | 7842 | 0.66 | 0.659773 |
Target: 5'- gCGUCCaGCCGCcggcGCCGGCaccgagGCGGCc -3' miRNA: 3'- -GCAGG-CGGCGua--UGGUUGaca---CGCUG- -5' |
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26265 | 3' | -55.2 | NC_005345.2 | + | 5648 | 0.66 | 0.659773 |
Target: 5'- gGUUCGCCGCG-ACC--UUG-GCGGCg -3' miRNA: 3'- gCAGGCGGCGUaUGGuuGACaCGCUG- -5' |
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26265 | 3' | -55.2 | NC_005345.2 | + | 30164 | 0.67 | 0.64868 |
Target: 5'- uCGUcCCGCCG---GCCAGCg--GCGACc -3' miRNA: 3'- -GCA-GGCGGCguaUGGUUGacaCGCUG- -5' |
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26265 | 3' | -55.2 | NC_005345.2 | + | 14818 | 0.67 | 0.637572 |
Target: 5'- gGUCUucgGCCuGCGUGCCGAacaggGCGACg -3' miRNA: 3'- gCAGG---CGG-CGUAUGGUUgaca-CGCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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