miRNA display CGI


Results 41 - 59 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26265 5' -58.7 NC_005345.2 + 10058 0.66 0.527151
Target:  5'- aCCgACgACGCCGAcGUCGcGGCGagcGUCCa -3'
miRNA:   3'- -GG-UG-UGCGGCUcCAGC-CCGUa--CAGGc -5'
26265 5' -58.7 NC_005345.2 + 26931 0.66 0.537483
Target:  5'- gCGCAUgGUCGAGGUCaGGCAgacgaucccGUCCc -3'
miRNA:   3'- gGUGUG-CGGCUCCAGcCCGUa--------CAGGc -5'
26265 5' -58.7 NC_005345.2 + 18789 0.66 0.547884
Target:  5'- gCCGCGgGCUGccGUCGGGCAggGUgaCGg -3'
miRNA:   3'- -GGUGUgCGGCucCAGCCCGUa-CAg-GC- -5'
26265 5' -58.7 NC_005345.2 + 24365 0.66 0.547884
Target:  5'- aCCACcuUGCCGAGGUCGGaCGacGcCCGc -3'
miRNA:   3'- -GGUGu-GCGGCUCCAGCCcGUa-CaGGC- -5'
26265 5' -58.7 NC_005345.2 + 31457 0.67 0.457233
Target:  5'- gCgAgGCGCCGGGGUgCGGGUGUGaggCgGg -3'
miRNA:   3'- -GgUgUGCGGCUCCA-GCCCGUACa--GgC- -5'
26265 5' -58.7 NC_005345.2 + 14793 0.67 0.446694
Target:  5'- uCCAUcgcgaacagugcgGCGCCGAGGucuUCGGccuGCGUG-CCGa -3'
miRNA:   3'- -GGUG-------------UGCGGCUCC---AGCC---CGUACaGGC- -5'
26265 5' -58.7 NC_005345.2 + 9327 0.77 0.119405
Target:  5'- cCCGCgAUGCCGAGGguggucGGCAUGUCCa -3'
miRNA:   3'- -GGUG-UGCGGCUCCagc---CCGUACAGGc -5'
26265 5' -58.7 NC_005345.2 + 24237 0.76 0.136749
Target:  5'- cCCACACGCCGAGcGUgaacaGGuGCccGUCCGa -3'
miRNA:   3'- -GGUGUGCGGCUC-CAg----CC-CGuaCAGGC- -5'
26265 5' -58.7 NC_005345.2 + 22284 0.74 0.164927
Target:  5'- aCCGCAcCGCCGcuGUCGGGCAcguUGcCCGc -3'
miRNA:   3'- -GGUGU-GCGGCucCAGCCCGU---ACaGGC- -5'
26265 5' -58.7 NC_005345.2 + 23424 0.74 0.183282
Target:  5'- aCCGCgACGcCCGGGuGUCGGGUucgccGUCCGg -3'
miRNA:   3'- -GGUG-UGC-GGCUC-CAGCCCGua---CAGGC- -5'
26265 5' -58.7 NC_005345.2 + 32896 0.74 0.188145
Target:  5'- cCCGCAgGCUGGGGgcgcugCGGGCcgGUCg- -3'
miRNA:   3'- -GGUGUgCGGCUCCa-----GCCCGuaCAGgc -5'
26265 5' -58.7 NC_005345.2 + 45469 0.71 0.262252
Target:  5'- aCgGCG-GCCGGGGU-GGGCAUGUCgGc -3'
miRNA:   3'- -GgUGUgCGGCUCCAgCCCGUACAGgC- -5'
26265 5' -58.7 NC_005345.2 + 39511 0.7 0.318725
Target:  5'- cCCACACGCCGucGGucUCGGGCAcGg-CGa -3'
miRNA:   3'- -GGUGUGCGGCu-CC--AGCCCGUaCagGC- -5'
26265 5' -58.7 NC_005345.2 + 45558 0.7 0.34214
Target:  5'- -aGCG-GCCGAGGUCgGGGCGgg-CCGg -3'
miRNA:   3'- ggUGUgCGGCUCCAG-CCCGUacaGGC- -5'
26265 5' -58.7 NC_005345.2 + 12765 0.69 0.366771
Target:  5'- cCCACACGCCGcGGccgCGGaGCGcGcCCGc -3'
miRNA:   3'- -GGUGUGCGGCuCCa--GCC-CGUaCaGGC- -5'
26265 5' -58.7 NC_005345.2 + 23043 0.69 0.383857
Target:  5'- gCUGCAuccCGCCGAGGUCGuGCAcaucgccgcUGUCUGc -3'
miRNA:   3'- -GGUGU---GCGGCUCCAGCcCGU---------ACAGGC- -5'
26265 5' -58.7 NC_005345.2 + 26691 0.68 0.392596
Target:  5'- gCUGCACGuccCCGAGGcggCGuGGCAUGUCg- -3'
miRNA:   3'- -GGUGUGC---GGCUCCa--GC-CCGUACAGgc -5'
26265 5' -58.7 NC_005345.2 + 40247 0.68 0.419575
Target:  5'- uCCugGCGagcggggaCGGGGcgccggCGGGCAUgaGUCCGg -3'
miRNA:   3'- -GGugUGCg-------GCUCCa-----GCCCGUA--CAGGC- -5'
26265 5' -58.7 NC_005345.2 + 31794 0.66 0.558347
Target:  5'- gCACucggguuCGCCGuccGGGUCGGG---GUCCGg -3'
miRNA:   3'- gGUGu------GCGGC---UCCAGCCCguaCAGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.