miRNA display CGI


Results 21 - 40 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26265 5' -58.7 NC_005345.2 + 41513 0.66 0.559397
Target:  5'- gCCGCACGCCucgauguucugggccGGGUCGGcGaUGUGcUCCGa -3'
miRNA:   3'- -GGUGUGCGGc--------------UCCAGCC-C-GUAC-AGGC- -5'
26265 5' -58.7 NC_005345.2 + 19988 0.66 0.506718
Target:  5'- cCCGguuCGCCGAGGgcgacaggCGGGC-UG-CCGg -3'
miRNA:   3'- -GGUgu-GCGGCUCCa-------GCCCGuACaGGC- -5'
26265 5' -58.7 NC_005345.2 + 31451 0.66 0.537483
Target:  5'- uCC-CGuCGCCGAGGcCGGcGCG-GUUCGu -3'
miRNA:   3'- -GGuGU-GCGGCUCCaGCC-CGUaCAGGC- -5'
26265 5' -58.7 NC_005345.2 + 30159 0.68 0.419575
Target:  5'- cCCGCucGgGCCGAGGcUCGGGCAUcgaCGc -3'
miRNA:   3'- -GGUG--UgCGGCUCC-AGCCCGUAcagGC- -5'
26265 5' -58.7 NC_005345.2 + 36025 0.66 0.558347
Target:  5'- aCAUgauCGCCaAGaUCGGGCA-GUCCGg -3'
miRNA:   3'- gGUGu--GCGGcUCcAGCCCGUaCAGGC- -5'
26265 5' -58.7 NC_005345.2 + 27970 0.68 0.419575
Target:  5'- aCCACAagGCCGAGGcCGcgaaguacaaGGCGcUGUCCc -3'
miRNA:   3'- -GGUGUg-CGGCUCCaGC----------CCGU-ACAGGc -5'
26265 5' -58.7 NC_005345.2 + 40213 0.68 0.419575
Target:  5'- gCAgcUACGUCGAgacggugccGGUCGGGCAguUCCGg -3'
miRNA:   3'- gGU--GUGCGGCU---------CCAGCCCGUacAGGC- -5'
26265 5' -58.7 NC_005345.2 + 39754 0.66 0.510779
Target:  5'- gCCACGCGCCgucgacgacggcgagGAGGaguggCGGGUGUGgacgCUGc -3'
miRNA:   3'- -GGUGUGCGG---------------CUCCa----GCCCGUACa---GGC- -5'
26265 5' -58.7 NC_005345.2 + 15490 0.66 0.515873
Target:  5'- cCCGagcuGCGCCGcaaGUCGGGCGuugcucuUGUCCu -3'
miRNA:   3'- -GGUg---UGCGGCuc-CAGCCCGU-------ACAGGc -5'
26265 5' -58.7 NC_005345.2 + 23006 0.8 0.06308
Target:  5'- uCCu--CGCCGAGGUCGGGCA--UCCGg -3'
miRNA:   3'- -GGuguGCGGCUCCAGCCCGUacAGGC- -5'
26265 5' -58.7 NC_005345.2 + 9327 0.77 0.119405
Target:  5'- cCCGCgAUGCCGAGGguggucGGCAUGUCCa -3'
miRNA:   3'- -GGUG-UGCGGCUCCagc---CCGUACAGGc -5'
26265 5' -58.7 NC_005345.2 + 31457 0.67 0.457233
Target:  5'- gCgAgGCGCCGGGGUgCGGGUGUGaggCgGg -3'
miRNA:   3'- -GgUgUGCGGCUCCA-GCCCGUACa--GgC- -5'
26265 5' -58.7 NC_005345.2 + 32543 0.67 0.466928
Target:  5'- gCCG-ACGCCGAgggGGUCGGGCcacgCCa -3'
miRNA:   3'- -GGUgUGCGGCU---CCAGCCCGuacaGGc -5'
26265 5' -58.7 NC_005345.2 + 18187 0.67 0.472796
Target:  5'- aCCGCGCGCCGuuccaaugcacccGGUCGcGGcCGUGcaCCGu -3'
miRNA:   3'- -GGUGUGCGGCu------------CCAGC-CC-GUACa-GGC- -5'
26265 5' -58.7 NC_005345.2 + 5749 0.67 0.476729
Target:  5'- gCCGCA-GCCGAGGacugcgcCGaGGCG-GUCCGc -3'
miRNA:   3'- -GGUGUgCGGCUCCa------GC-CCGUaCAGGC- -5'
26265 5' -58.7 NC_005345.2 + 45469 0.71 0.262252
Target:  5'- aCgGCG-GCCGGGGU-GGGCAUGUCgGc -3'
miRNA:   3'- -GgUGUgCGGCUCCAgCCCGUACAGgC- -5'
26265 5' -58.7 NC_005345.2 + 32896 0.74 0.188145
Target:  5'- cCCGCAgGCUGGGGgcgcugCGGGCcgGUCg- -3'
miRNA:   3'- -GGUGUgCGGCUCCa-----GCCCGuaCAGgc -5'
26265 5' -58.7 NC_005345.2 + 23424 0.74 0.183282
Target:  5'- aCCGCgACGcCCGGGuGUCGGGUucgccGUCCGg -3'
miRNA:   3'- -GGUG-UGC-GGCUC-CAGCCCGua---CAGGC- -5'
26265 5' -58.7 NC_005345.2 + 22284 0.74 0.164927
Target:  5'- aCCGCAcCGCCGcuGUCGGGCAcguUGcCCGc -3'
miRNA:   3'- -GGUGU-GCGGCucCAGCCCGU---ACaGGC- -5'
26265 5' -58.7 NC_005345.2 + 24237 0.76 0.136749
Target:  5'- cCCACACGCCGAGcGUgaacaGGuGCccGUCCGa -3'
miRNA:   3'- -GGUGUGCGGCUC-CAg----CC-CGuaCAGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.