miRNA display CGI


Results 21 - 40 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26265 5' -58.7 NC_005345.2 + 19988 0.66 0.506718
Target:  5'- cCCGguuCGCCGAGGgcgacaggCGGGC-UG-CCGg -3'
miRNA:   3'- -GGUgu-GCGGCUCCa-------GCCCGuACaGGC- -5'
26265 5' -58.7 NC_005345.2 + 21781 0.66 0.506718
Target:  5'- -gGCGaGCCGGGGUCGGGUGgacUGaUUCGa -3'
miRNA:   3'- ggUGUgCGGCUCCAGCCCGU---AC-AGGC- -5'
26265 5' -58.7 NC_005345.2 + 22284 0.74 0.164927
Target:  5'- aCCGCAcCGCCGcuGUCGGGCAcguUGcCCGc -3'
miRNA:   3'- -GGUGU-GCGGCucCAGCCCGU---ACaGGC- -5'
26265 5' -58.7 NC_005345.2 + 23006 0.8 0.06308
Target:  5'- uCCu--CGCCGAGGUCGGGCA--UCCGg -3'
miRNA:   3'- -GGuguGCGGCUCCAGCCCGUacAGGC- -5'
26265 5' -58.7 NC_005345.2 + 23043 0.69 0.383857
Target:  5'- gCUGCAuccCGCCGAGGUCGuGCAcaucgccgcUGUCUGc -3'
miRNA:   3'- -GGUGU---GCGGCUCCAGCcCGU---------ACAGGC- -5'
26265 5' -58.7 NC_005345.2 + 23424 0.74 0.183282
Target:  5'- aCCGCgACGcCCGGGuGUCGGGUucgccGUCCGg -3'
miRNA:   3'- -GGUG-UGC-GGCUC-CAGCCCGua---CAGGC- -5'
26265 5' -58.7 NC_005345.2 + 23662 0.68 0.426029
Target:  5'- ---gGCGCCGAccagggucgcggccGGUCGGGCGgg-CCGa -3'
miRNA:   3'- ggugUGCGGCU--------------CCAGCCCGUacaGGC- -5'
26265 5' -58.7 NC_005345.2 + 24237 0.76 0.136749
Target:  5'- cCCACACGCCGAGcGUgaacaGGuGCccGUCCGa -3'
miRNA:   3'- -GGUGUGCGGCUC-CAg----CC-CGuaCAGGC- -5'
26265 5' -58.7 NC_005345.2 + 24365 0.66 0.547884
Target:  5'- aCCACcuUGCCGAGGUCGGaCGacGcCCGc -3'
miRNA:   3'- -GGUGu-GCGGCUCCAGCCcGUa-CaGGC- -5'
26265 5' -58.7 NC_005345.2 + 26640 0.66 0.527151
Target:  5'- aCUACACcgagGCCGAGGUgcggUGGGCGaacCCGg -3'
miRNA:   3'- -GGUGUG----CGGCUCCA----GCCCGUacaGGC- -5'
26265 5' -58.7 NC_005345.2 + 26691 0.68 0.392596
Target:  5'- gCUGCACGuccCCGAGGcggCGuGGCAUGUCg- -3'
miRNA:   3'- -GGUGUGC---GGCUCCa--GC-CCGUACAGgc -5'
26265 5' -58.7 NC_005345.2 + 26844 0.73 0.193121
Target:  5'- cCgGCGCGCCGAGcG-CGGGCAacgUGcCCGa -3'
miRNA:   3'- -GgUGUGCGGCUC-CaGCCCGU---ACaGGC- -5'
26265 5' -58.7 NC_005345.2 + 26931 0.66 0.537483
Target:  5'- gCGCAUgGUCGAGGUCaGGCAgacgaucccGUCCc -3'
miRNA:   3'- gGUGUG-CGGCUCCAGcCCGUa--------CAGGc -5'
26265 5' -58.7 NC_005345.2 + 27970 0.68 0.419575
Target:  5'- aCCACAagGCCGAGGcCGcgaaguacaaGGCGcUGUCCc -3'
miRNA:   3'- -GGUGUg-CGGCUCCaGC----------CCGU-ACAGGc -5'
26265 5' -58.7 NC_005345.2 + 28626 0.67 0.486631
Target:  5'- aCGCACuacCCGgaaggguuuuucAGGUCGGGCAU-UCCGc -3'
miRNA:   3'- gGUGUGc--GGC------------UCCAGCCCGUAcAGGC- -5'
26265 5' -58.7 NC_005345.2 + 30159 0.68 0.419575
Target:  5'- cCCGCucGgGCCGAGGcUCGGGCAUcgaCGc -3'
miRNA:   3'- -GGUG--UgCGGCUCC-AGCCCGUAcagGC- -5'
26265 5' -58.7 NC_005345.2 + 31451 0.66 0.537483
Target:  5'- uCC-CGuCGCCGAGGcCGGcGCG-GUUCGu -3'
miRNA:   3'- -GGuGU-GCGGCUCCaGCC-CGUaCAGGC- -5'
26265 5' -58.7 NC_005345.2 + 31457 0.67 0.457233
Target:  5'- gCgAgGCGCCGGGGUgCGGGUGUGaggCgGg -3'
miRNA:   3'- -GgUgUGCGGCUCCA-GCCCGUACa--GgC- -5'
26265 5' -58.7 NC_005345.2 + 31794 0.66 0.558347
Target:  5'- gCACucggguuCGCCGuccGGGUCGGG---GUCCGg -3'
miRNA:   3'- gGUGu------GCGGC---UCCAGCCCguaCAGGC- -5'
26265 5' -58.7 NC_005345.2 + 32029 0.72 0.236605
Target:  5'- aCCGCGCuggauccggcaugGCUGccGGUCGGGCugcUGUCCGa -3'
miRNA:   3'- -GGUGUG-------------CGGCu-CCAGCCCGu--ACAGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.