miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26265 5' -58.7 NC_005345.2 + 873 0.7 0.303796
Target:  5'- gCGCACuGCgCGcGGUCGGGCGgcaucaguucGUCCGg -3'
miRNA:   3'- gGUGUG-CG-GCuCCAGCCCGUa---------CAGGC- -5'
26265 5' -58.7 NC_005345.2 + 1219 0.68 0.401463
Target:  5'- gCCACGCuUCG-GGUCGGcGUAcGUCCGu -3'
miRNA:   3'- -GGUGUGcGGCuCCAGCC-CGUaCAGGC- -5'
26265 5' -58.7 NC_005345.2 + 5224 0.66 0.510779
Target:  5'- gCUACACGCCGucgGGGUgcccgcgguacacggUGGGCGUGaCgGg -3'
miRNA:   3'- -GGUGUGCGGC---UCCA---------------GCCCGUACaGgC- -5'
26265 5' -58.7 NC_005345.2 + 5749 0.67 0.476729
Target:  5'- gCCGCA-GCCGAGGacugcgcCGaGGCG-GUCCGc -3'
miRNA:   3'- -GGUGUgCGGCUCCa------GC-CCGUaCAGGC- -5'
26265 5' -58.7 NC_005345.2 + 7299 0.67 0.465954
Target:  5'- gUACgACGCCGAGGUCGuccccgaugagucGGCGgacgCCGa -3'
miRNA:   3'- gGUG-UGCGGCUCCAGC-------------CCGUaca-GGC- -5'
26265 5' -58.7 NC_005345.2 + 9327 0.77 0.119405
Target:  5'- cCCGCgAUGCCGAGGguggucGGCAUGUCCa -3'
miRNA:   3'- -GGUG-UGCGGCUCCagc---CCGUACAGGc -5'
26265 5' -58.7 NC_005345.2 + 9713 0.66 0.527151
Target:  5'- gCACAucaguccguCGCCGGGGUCGaGCggGUCgGc -3'
miRNA:   3'- gGUGU---------GCGGCUCCAGCcCGuaCAGgC- -5'
26265 5' -58.7 NC_005345.2 + 9959 0.7 0.326394
Target:  5'- cCCGCG-GCCcGGGuUCGGGCugggGUCCGc -3'
miRNA:   3'- -GGUGUgCGGcUCC-AGCCCGua--CAGGC- -5'
26265 5' -58.7 NC_005345.2 + 10058 0.66 0.527151
Target:  5'- aCCgACgACGCCGAcGUCGcGGCGagcGUCCa -3'
miRNA:   3'- -GG-UG-UGCGGCUcCAGC-CCGUa--CAGGc -5'
26265 5' -58.7 NC_005345.2 + 12765 0.69 0.366771
Target:  5'- cCCACACGCCGcGGccgCGGaGCGcGcCCGc -3'
miRNA:   3'- -GGUGUGCGGCuCCa--GCC-CGUaCaGGC- -5'
26265 5' -58.7 NC_005345.2 + 13516 0.66 0.558347
Target:  5'- gCACcCGUCGAucguguucuGGgaccgCGGGCAgcUGUCCGu -3'
miRNA:   3'- gGUGuGCGGCU---------CCa----GCCCGU--ACAGGC- -5'
26265 5' -58.7 NC_005345.2 + 14793 0.67 0.446694
Target:  5'- uCCAUcgcgaacagugcgGCGCCGAGGucuUCGGccuGCGUG-CCGa -3'
miRNA:   3'- -GGUG-------------UGCGGCUCC---AGCC---CGUACaGGC- -5'
26265 5' -58.7 NC_005345.2 + 15490 0.66 0.515873
Target:  5'- cCCGagcuGCGCCGcaaGUCGGGCGuugcucuUGUCCu -3'
miRNA:   3'- -GGUg---UGCGGCuc-CAGCCCGU-------ACAGGc -5'
26265 5' -58.7 NC_005345.2 + 15967 0.67 0.464008
Target:  5'- gCCGCGaucguCGCCGAGGUCguccguaccucuguGGGCGacgugcUGcCCGa -3'
miRNA:   3'- -GGUGU-----GCGGCUCCAG--------------CCCGU------ACaGGC- -5'
26265 5' -58.7 NC_005345.2 + 16170 0.66 0.547884
Target:  5'- gCCGCcuGCGCCGAGGacuacgCGGacGCGgccggcGUCCGc -3'
miRNA:   3'- -GGUG--UGCGGCUCCa-----GCC--CGUa-----CAGGC- -5'
26265 5' -58.7 NC_005345.2 + 18187 0.67 0.472796
Target:  5'- aCCGCGCGCCGuuccaaugcacccGGUCGcGGcCGUGcaCCGu -3'
miRNA:   3'- -GGUGUGCGGCu------------CCAGC-CC-GUACa-GGC- -5'
26265 5' -58.7 NC_005345.2 + 18203 0.7 0.318725
Target:  5'- gCGCGCGCCGA-GUgGGGCGccgcGUUCGg -3'
miRNA:   3'- gGUGUGCGGCUcCAgCCCGUa---CAGGC- -5'
26265 5' -58.7 NC_005345.2 + 18499 0.67 0.496629
Target:  5'- aCC-CGgGUCGAGGUCGagcgaguacgcGGCGUcggcGUCCGg -3'
miRNA:   3'- -GGuGUgCGGCUCCAGC-----------CCGUA----CAGGC- -5'
26265 5' -58.7 NC_005345.2 + 18789 0.66 0.547884
Target:  5'- gCCGCGgGCUGccGUCGGGCAggGUgaCGg -3'
miRNA:   3'- -GGUGUgCGGCucCAGCCCGUa-CAg-GC- -5'
26265 5' -58.7 NC_005345.2 + 19883 0.71 0.262252
Target:  5'- aCCGCGCGCCGAuGUugCGGGCGaG-CCGc -3'
miRNA:   3'- -GGUGUGCGGCUcCA--GCCCGUaCaGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.