miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26265 5' -58.7 NC_005345.2 + 42379 1.09 0.000479
Target:  5'- gCCACACGCCGAGGUCGGGCAUGUCCGc -3'
miRNA:   3'- -GGUGUGCGGCUCCAGCCCGUACAGGC- -5'
26265 5' -58.7 NC_005345.2 + 23006 0.8 0.06308
Target:  5'- uCCu--CGCCGAGGUCGGGCA--UCCGg -3'
miRNA:   3'- -GGuguGCGGCUCCAGCCCGUacAGGC- -5'
26265 5' -58.7 NC_005345.2 + 9327 0.77 0.119405
Target:  5'- cCCGCgAUGCCGAGGguggucGGCAUGUCCa -3'
miRNA:   3'- -GGUG-UGCGGCUCCagc---CCGUACAGGc -5'
26265 5' -58.7 NC_005345.2 + 24237 0.76 0.136749
Target:  5'- cCCACACGCCGAGcGUgaacaGGuGCccGUCCGa -3'
miRNA:   3'- -GGUGUGCGGCUC-CAg----CC-CGuaCAGGC- -5'
26265 5' -58.7 NC_005345.2 + 22284 0.74 0.164927
Target:  5'- aCCGCAcCGCCGcuGUCGGGCAcguUGcCCGc -3'
miRNA:   3'- -GGUGU-GCGGCucCAGCCCGU---ACaGGC- -5'
26265 5' -58.7 NC_005345.2 + 23424 0.74 0.183282
Target:  5'- aCCGCgACGcCCGGGuGUCGGGUucgccGUCCGg -3'
miRNA:   3'- -GGUG-UGC-GGCUC-CAGCCCGua---CAGGC- -5'
26265 5' -58.7 NC_005345.2 + 32896 0.74 0.188145
Target:  5'- cCCGCAgGCUGGGGgcgcugCGGGCcgGUCg- -3'
miRNA:   3'- -GGUGUgCGGCUCCa-----GCCCGuaCAGgc -5'
26265 5' -58.7 NC_005345.2 + 26844 0.73 0.193121
Target:  5'- cCgGCGCGCCGAGcG-CGGGCAacgUGcCCGa -3'
miRNA:   3'- -GgUGUGCGGCUC-CaGCCCGU---ACaGGC- -5'
26265 5' -58.7 NC_005345.2 + 45661 0.73 0.219758
Target:  5'- cCCACGagccuCGCgCGGGuaacGUCGaGGCAUGUCCGa -3'
miRNA:   3'- -GGUGU-----GCG-GCUC----CAGC-CCGUACAGGC- -5'
26265 5' -58.7 NC_005345.2 + 42232 0.72 0.225449
Target:  5'- gCGCGCGCCGAGGUCgacacGGGCGggaaCGu -3'
miRNA:   3'- gGUGUGCGGCUCCAG-----CCCGUacagGC- -5'
26265 5' -58.7 NC_005345.2 + 32029 0.72 0.236605
Target:  5'- aCCGCGCuggauccggcaugGCUGccGGUCGGGCugcUGUCCGa -3'
miRNA:   3'- -GGUGUG-------------CGGCu-CCAGCCCGu--ACAGGC- -5'
26265 5' -58.7 NC_005345.2 + 45469 0.71 0.262252
Target:  5'- aCgGCG-GCCGGGGU-GGGCAUGUCgGc -3'
miRNA:   3'- -GgUGUgCGGCUCCAgCCCGUACAGgC- -5'
26265 5' -58.7 NC_005345.2 + 19883 0.71 0.262252
Target:  5'- aCCGCGCGCCGAuGUugCGGGCGaG-CCGc -3'
miRNA:   3'- -GGUGUGCGGCUcCA--GCCCGUaCaGGC- -5'
26265 5' -58.7 NC_005345.2 + 873 0.7 0.303796
Target:  5'- gCGCACuGCgCGcGGUCGGGCGgcaucaguucGUCCGg -3'
miRNA:   3'- gGUGUG-CG-GCuCCAGCCCGUa---------CAGGC- -5'
26265 5' -58.7 NC_005345.2 + 18203 0.7 0.318725
Target:  5'- gCGCGCGCCGA-GUgGGGCGccgcGUUCGg -3'
miRNA:   3'- gGUGUGCGGCUcCAgCCCGUa---CAGGC- -5'
26265 5' -58.7 NC_005345.2 + 39511 0.7 0.318725
Target:  5'- cCCACACGCCGucGGucUCGGGCAcGg-CGa -3'
miRNA:   3'- -GGUGUGCGGCu-CC--AGCCCGUaCagGC- -5'
26265 5' -58.7 NC_005345.2 + 42968 0.7 0.326394
Target:  5'- gCACGCGCaCGAaccgGGcCGGGCGUgugGUCCu -3'
miRNA:   3'- gGUGUGCG-GCU----CCaGCCCGUA---CAGGc -5'
26265 5' -58.7 NC_005345.2 + 9959 0.7 0.326394
Target:  5'- cCCGCG-GCCcGGGuUCGGGCugggGUCCGc -3'
miRNA:   3'- -GGUGUgCGGcUCC-AGCCCGua--CAGGC- -5'
26265 5' -58.7 NC_005345.2 + 45558 0.7 0.34214
Target:  5'- -aGCG-GCCGAGGUCgGGGCGgg-CCGg -3'
miRNA:   3'- ggUGUgCGGCUCCAG-CCCGUacaGGC- -5'
26265 5' -58.7 NC_005345.2 + 12765 0.69 0.366771
Target:  5'- cCCACACGCCGcGGccgCGGaGCGcGcCCGc -3'
miRNA:   3'- -GGUGUGCGGCuCCa--GCC-CGUaCaGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.