miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26265 5' -58.7 NC_005345.2 + 26844 0.73 0.193121
Target:  5'- cCgGCGCGCCGAGcG-CGGGCAacgUGcCCGa -3'
miRNA:   3'- -GgUGUGCGGCUC-CaGCCCGU---ACaGGC- -5'
26265 5' -58.7 NC_005345.2 + 28626 0.67 0.486631
Target:  5'- aCGCACuacCCGgaaggguuuuucAGGUCGGGCAU-UCCGc -3'
miRNA:   3'- gGUGUGc--GGC------------UCCAGCCCGUAcAGGC- -5'
26265 5' -58.7 NC_005345.2 + 19988 0.66 0.506718
Target:  5'- cCCGguuCGCCGAGGgcgacaggCGGGC-UG-CCGg -3'
miRNA:   3'- -GGUgu-GCGGCUCCa-------GCCCGuACaGGC- -5'
26265 5' -58.7 NC_005345.2 + 41513 0.66 0.559397
Target:  5'- gCCGCACGCCucgauguucugggccGGGUCGGcGaUGUGcUCCGa -3'
miRNA:   3'- -GGUGUGCGGc--------------UCCAGCC-C-GUAC-AGGC- -5'
26265 5' -58.7 NC_005345.2 + 873 0.7 0.303796
Target:  5'- gCGCACuGCgCGcGGUCGGGCGgcaucaguucGUCCGg -3'
miRNA:   3'- gGUGUG-CG-GCuCCAGCCCGUa---------CAGGC- -5'
26265 5' -58.7 NC_005345.2 + 18203 0.7 0.318725
Target:  5'- gCGCGCGCCGA-GUgGGGCGccgcGUUCGg -3'
miRNA:   3'- gGUGUGCGGCUcCAgCCCGUa---CAGGC- -5'
26265 5' -58.7 NC_005345.2 + 9959 0.7 0.326394
Target:  5'- cCCGCG-GCCcGGGuUCGGGCugggGUCCGc -3'
miRNA:   3'- -GGUGUgCGGcUCC-AGCCCGua--CAGGC- -5'
26265 5' -58.7 NC_005345.2 + 33898 0.69 0.383857
Target:  5'- cUCGCGCgGCCGGGcagcugauccGUaCGGGCAUGUCa- -3'
miRNA:   3'- -GGUGUG-CGGCUC----------CA-GCCCGUACAGgc -5'
26265 5' -58.7 NC_005345.2 + 27970 0.68 0.419575
Target:  5'- aCCACAagGCCGAGGcCGcgaaguacaaGGCGcUGUCCc -3'
miRNA:   3'- -GGUGUg-CGGCUCCaGC----------CCGU-ACAGGc -5'
26265 5' -58.7 NC_005345.2 + 7299 0.67 0.465954
Target:  5'- gUACgACGCCGAGGUCGuccccgaugagucGGCGgacgCCGa -3'
miRNA:   3'- gGUG-UGCGGCUCCAGC-------------CCGUaca-GGC- -5'
26265 5' -58.7 NC_005345.2 + 23662 0.68 0.426029
Target:  5'- ---gGCGCCGAccagggucgcggccGGUCGGGCGgg-CCGa -3'
miRNA:   3'- ggugUGCGGCU--------------CCAGCCCGUacaGGC- -5'
26265 5' -58.7 NC_005345.2 + 40213 0.68 0.419575
Target:  5'- gCAgcUACGUCGAgacggugccGGUCGGGCAguUCCGg -3'
miRNA:   3'- gGU--GUGCGGCU---------CCAGCCCGUacAGGC- -5'
26265 5' -58.7 NC_005345.2 + 45661 0.73 0.219758
Target:  5'- cCCACGagccuCGCgCGGGuaacGUCGaGGCAUGUCCGa -3'
miRNA:   3'- -GGUGU-----GCG-GCUC----CAGC-CCGUACAGGC- -5'
26265 5' -58.7 NC_005345.2 + 47941 0.68 0.438172
Target:  5'- aCCGCGCGgCGuGGcccgCGGGCcgGacugCCGa -3'
miRNA:   3'- -GGUGUGCgGCuCCa---GCCCGuaCa---GGC- -5'
26265 5' -58.7 NC_005345.2 + 42232 0.72 0.225449
Target:  5'- gCGCGCGCCGAGGUCgacacGGGCGggaaCGu -3'
miRNA:   3'- gGUGUGCGGCUCCAG-----CCCGUacagGC- -5'
26265 5' -58.7 NC_005345.2 + 1219 0.68 0.401463
Target:  5'- gCCACGCuUCG-GGUCGGcGUAcGUCCGu -3'
miRNA:   3'- -GGUGUGcGGCuCCAGCC-CGUaCAGGC- -5'
26265 5' -58.7 NC_005345.2 + 15967 0.67 0.464008
Target:  5'- gCCGCGaucguCGCCGAGGUCguccguaccucuguGGGCGacgugcUGcCCGa -3'
miRNA:   3'- -GGUGU-----GCGGCUCCAG--------------CCCGU------ACaGGC- -5'
26265 5' -58.7 NC_005345.2 + 21781 0.66 0.506718
Target:  5'- -gGCGaGCCGGGGUCGGGUGgacUGaUUCGa -3'
miRNA:   3'- ggUGUgCGGCUCCAGCCCGU---AC-AGGC- -5'
26265 5' -58.7 NC_005345.2 + 32029 0.72 0.236605
Target:  5'- aCCGCGCuggauccggcaugGCUGccGGUCGGGCugcUGUCCGa -3'
miRNA:   3'- -GGUGUG-------------CGGCu-CCAGCCCGu--ACAGGC- -5'
26265 5' -58.7 NC_005345.2 + 42968 0.7 0.326394
Target:  5'- gCACGCGCaCGAaccgGGcCGGGCGUgugGUCCu -3'
miRNA:   3'- gGUGUGCG-GCU----CCaGCCCGUA---CAGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.