miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26265 5' -58.7 NC_005345.2 + 45558 0.7 0.34214
Target:  5'- -aGCG-GCCGAGGUCgGGGCGgg-CCGg -3'
miRNA:   3'- ggUGUgCGGCUCCAG-CCCGUacaGGC- -5'
26265 5' -58.7 NC_005345.2 + 18187 0.67 0.472796
Target:  5'- aCCGCGCGCCGuuccaaugcacccGGUCGcGGcCGUGcaCCGu -3'
miRNA:   3'- -GGUGUGCGGCu------------CCAGC-CC-GUACa-GGC- -5'
26265 5' -58.7 NC_005345.2 + 32543 0.67 0.466928
Target:  5'- gCCG-ACGCCGAgggGGUCGGGCcacgCCa -3'
miRNA:   3'- -GGUgUGCGGCU---CCAGCCCGuacaGGc -5'
26265 5' -58.7 NC_005345.2 + 31457 0.67 0.457233
Target:  5'- gCgAgGCGCCGGGGUgCGGGUGUGaggCgGg -3'
miRNA:   3'- -GgUgUGCGGCUCCA-GCCCGUACa--GgC- -5'
26265 5' -58.7 NC_005345.2 + 14793 0.67 0.446694
Target:  5'- uCCAUcgcgaacagugcgGCGCCGAGGucuUCGGccuGCGUG-CCGa -3'
miRNA:   3'- -GGUG-------------UGCGGCUCC---AGCC---CGUACaGGC- -5'
26265 5' -58.7 NC_005345.2 + 40247 0.68 0.419575
Target:  5'- uCCugGCGagcggggaCGGGGcgccggCGGGCAUgaGUCCGg -3'
miRNA:   3'- -GGugUGCg-------GCUCCa-----GCCCGUA--CAGGC- -5'
26265 5' -58.7 NC_005345.2 + 26691 0.68 0.392596
Target:  5'- gCUGCACGuccCCGAGGcggCGuGGCAUGUCg- -3'
miRNA:   3'- -GGUGUGC---GGCUCCa--GC-CCGUACAGgc -5'
26265 5' -58.7 NC_005345.2 + 23043 0.69 0.383857
Target:  5'- gCUGCAuccCGCCGAGGUCGuGCAcaucgccgcUGUCUGc -3'
miRNA:   3'- -GGUGU---GCGGCUCCAGCcCGU---------ACAGGC- -5'
26265 5' -58.7 NC_005345.2 + 12765 0.69 0.366771
Target:  5'- cCCACACGCCGcGGccgCGGaGCGcGcCCGc -3'
miRNA:   3'- -GGUGUGCGGCuCCa--GCC-CGUaCaGGC- -5'
26265 5' -58.7 NC_005345.2 + 5749 0.67 0.476729
Target:  5'- gCCGCA-GCCGAGGacugcgcCGaGGCG-GUCCGc -3'
miRNA:   3'- -GGUGUgCGGCUCCa------GC-CCGUaCAGGC- -5'
26265 5' -58.7 NC_005345.2 + 44692 0.67 0.486631
Target:  5'- -gACGCGCCacucaGGGGU-GGGCGUG-CCa -3'
miRNA:   3'- ggUGUGCGG-----CUCCAgCCCGUACaGGc -5'
26265 5' -58.7 NC_005345.2 + 43608 0.67 0.496629
Target:  5'- uUCGuCACGCUGAucaGGUCGGGCccc-CCGg -3'
miRNA:   3'- -GGU-GUGCGGCU---CCAGCCCGuacaGGC- -5'
26265 5' -58.7 NC_005345.2 + 24365 0.66 0.547884
Target:  5'- aCCACcuUGCCGAGGUCGGaCGacGcCCGc -3'
miRNA:   3'- -GGUGu-GCGGCUCCAGCCcGUa-CaGGC- -5'
26265 5' -58.7 NC_005345.2 + 18789 0.66 0.547884
Target:  5'- gCCGCGgGCUGccGUCGGGCAggGUgaCGg -3'
miRNA:   3'- -GGUGUgCGGCucCAGCCCGUa-CAg-GC- -5'
26265 5' -58.7 NC_005345.2 + 26931 0.66 0.537483
Target:  5'- gCGCAUgGUCGAGGUCaGGCAgacgaucccGUCCc -3'
miRNA:   3'- gGUGUG-CGGCUCCAGcCCGUa--------CAGGc -5'
26265 5' -58.7 NC_005345.2 + 10058 0.66 0.527151
Target:  5'- aCCgACgACGCCGAcGUCGcGGCGagcGUCCa -3'
miRNA:   3'- -GG-UG-UGCGGCUcCAGC-CCGUa--CAGGc -5'
26265 5' -58.7 NC_005345.2 + 9713 0.66 0.527151
Target:  5'- gCACAucaguccguCGCCGGGGUCGaGCggGUCgGc -3'
miRNA:   3'- gGUGU---------GCGGCUCCAGCcCGuaCAGgC- -5'
26265 5' -58.7 NC_005345.2 + 15490 0.66 0.515873
Target:  5'- cCCGagcuGCGCCGcaaGUCGGGCGuugcucuUGUCCu -3'
miRNA:   3'- -GGUg---UGCGGCuc-CAGCCCGU-------ACAGGc -5'
26265 5' -58.7 NC_005345.2 + 5224 0.66 0.510779
Target:  5'- gCUACACGCCGucgGGGUgcccgcgguacacggUGGGCGUGaCgGg -3'
miRNA:   3'- -GGUGUGCGGC---UCCA---------------GCCCGUACaGgC- -5'
26265 5' -58.7 NC_005345.2 + 18499 0.67 0.496629
Target:  5'- aCC-CGgGUCGAGGUCGagcgaguacgcGGCGUcggcGUCCGg -3'
miRNA:   3'- -GGuGUgCGGCUCCAGC-----------CCGUA----CAGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.